Locus 3094

Sequence ID 2L_DroMel_CAF1
Location 8,805,411 – 8,805,514
Length 103
Max. P 0.590302
window4927

overview

Window 7

Location 8,805,411 – 8,805,514
Length 103
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.45
Mean single sequence MFE -39.72
Consensus MFE -17.17
Energy contribution -17.62
Covariance contribution 0.44
Combinations/Pair 1.09
Mean z-score -1.96
Structure conservation index 0.43
SVM decision value 0.11
SVM RNA-class probability 0.590302
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8805411 103 + 22407834
GGGCGCAUCGACUUGUGGGCGUGGC------CGAU--GAGGGCAGC---GGAAGAUGCA-AGGGGC--AGCAAAAUCCUUUUCAUCACAUGCUCCUUGGUUGGCCACUGCCGAAA---AG
...((((......))))((((((((------((((--.((((.(((---(...((((.(-(((((.--.......)))))).))))...)))))))).))))))))).)))....---.. ( -46.30)
>DroPse_CAF1 27389 111 + 1
GGGCUC------CGAUGGGCGAUGCCUUCAACGUU--GGGCCCAGUGUGGCAAGAUGCA-AGGGUCCCACACAAAUCCUUUUCAUCACAUGUUCCUUGGUUGGCCAUUGCCAAAAAAAAG
((((.(------((((((((...))).....))))--))))))....((((((((((.(-((((............))))).))))..........(((....)))))))))........ ( -35.70)
>DroEre_CAF1 18232 102 + 1
-GGCGCAUGGACUUGUGGGCGUGGC------CGAU--GGGGGCAGC---GGAAGAUGCA-AGGGGC--AGCAAAAUCCUUUUCAUCACAUGCUCCUUGGUUGGCCACUGCCGAAA---GG
-..((((......))))((((((((------((((--.((((.(((---(...((((.(-(((((.--.......)))))).))))...)))))))).))))))))).)))....---.. ( -46.20)
>DroYak_CAF1 15452 103 + 1
GGGCGCGUGGACUUGUGGGCGUGGC------CGAU--GAGGGCGCC---GGAAGAUGCA-AGGGGC--AGCAAAAUCCUUUUCAUCACAUGCUCCUUGGUUGGCCGCUGCCAAAA---AG
...((((......))))((((((((------((((--.((((.((.---....((((.(-(((((.--.......)))))).))))....)).)))).))))))))).)))....---.. ( -41.80)
>DroAna_CAF1 16322 96 + 1
-GGC----------GAGGGCGUGAC------CUAUGUGAGGCCAGC---GGAAGAUGCAGAGGGGA--AGCAAAAUCCUUUUCAUCACAUAUUCCUUGGUUGGCCAUUGCCGAAA--AAG
-(((----------((((......)------).......(((((((---((((((((.(((((((.--.......))))))))))).....))))...))))))).)))))....--... ( -32.60)
>DroPer_CAF1 27615 111 + 1
GGGCUC------CGAUGGGCGAUGCCUUCAACGUU--GGGCCCAGUGUGGCAAGAUGCA-AGGGUCCCACACAAAUCCUUUUCAUCACAUGUUCCUUGGUUGGCCAUUGCCAAAAAAAAG
((((.(------((((((((...))).....))))--))))))....((((((((((.(-((((............))))).))))..........(((....)))))))))........ ( -35.70)
>consensus
GGGCGC______UUGUGGGCGUGGC______CGAU__GAGGCCAGC___GGAAGAUGCA_AGGGGC__AGCAAAAUCCUUUUCAUCACAUGCUCCUUGGUUGGCCACUGCCAAAA___AG
.(((............(((((((..............(....)..........((((...((((...........))))...)))).)))))))..(((....)))..)))......... (-17.17 = -17.62 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:15 2006