Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,799,355 – 8,799,450 |
Length | 95 |
Max. P | 0.941721 |
Location | 8,799,355 – 8,799,450 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 90.73 |
Mean single sequence MFE | -32.76 |
Consensus MFE | -25.96 |
Energy contribution | -27.00 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.04 |
Mean z-score | -2.10 |
Structure conservation index | 0.79 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941721 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8799355 95 - 22407834 GAGCCAAGACAGCUCUUCCGUCCGGAGUCGGGGAGCCCAAAAAAGAUGAGAGACCGUCUUACAUGGACGCUCGUCUCACUCACACGGCCACACGA (.(((......(((((.(((.(....).))))))))........(((((((((.(((((.....))))).)).))))).))....))))...... ( -30.30) >DroSec_CAF1 7238 95 - 1 GAGCCAAGACAGCUCUUCCGGCCGGAGUCGGGGAGCCCAAAAAAGAUGAGAGACCGUCUUACAUGGACGCUCGUCUCACUCACACGGCCACACGA ((((.......))))....(((((((((.((((((((((...((((((......))))))...)))..)))).))).))))...)))))...... ( -33.70) >DroSim_CAF1 7255 95 - 1 GAGCCAAGACAGCUCUUCCGGCCGGAGUUGGGGAACCCAAAAAAGAUGAGAGACCGUCUUACAUGGACGCUCGUCUCACUCACACGGCCACACGA ((((.......))))....(((((...(((((...)))))....(((((((((.(((((.....))))).)).))))).))...)))))...... ( -34.70) >DroEre_CAF1 8930 89 - 1 GAGCCAAGAAAGCUCUUCCGGCCGGAGUCGGG-GUACCAAAAAAGAUGAGAGACCGUCUUACAUGGAUG-----CCCACUCACACGGCCACACGA ((((.......))))....(((((((((..((-((((((...((((((......))))))...))).))-----)))))))...)))))...... ( -33.60) >DroYak_CAF1 9121 94 - 1 GAGCCAAGAAAGCUCUUCCGGCCGGAGUCGGGAAUGCCGAAAAAGAUGAGAGACCGUCUUACAUGGACGCUG-GCUCACUCACACGGCCAUAUGA ((((.......))))....(((((...((((.....))))....((((((..(.(((((.....))))).).-.)))).))...)))))...... ( -31.50) >consensus GAGCCAAGACAGCUCUUCCGGCCGGAGUCGGGGAGCCCAAAAAAGAUGAGAGACCGUCUUACAUGGACGCUCGUCUCACUCACACGGCCACACGA ((((.......))))....(((((((((.((.....))...........((((((((((.....)))))...)))))))))...)))))...... (-25.96 = -27.00 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:11 2006