| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,797,565 – 8,797,665 |
| Length | 100 |
| Max. P | 0.886192 |
| Location | 8,797,565 – 8,797,665 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 88.66 |
| Mean single sequence MFE | -28.10 |
| Consensus MFE | -23.50 |
| Energy contribution | -23.58 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.886192 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8797565 100 - 22407834 CCAAUAAAAGCAAUCAUAACUCCGCAGAAAUGUUGCAAGUGGCUGGCGAAGGCCACCCGGUC----CCCAAAGUACUUGCAACAAAGCCAUUCGCAUCGGUUC---C .....................(((......((((((((((((.((((....)))).))((..----.)).....))))))))))..((.....))..)))...---. ( -28.10) >DroSec_CAF1 5503 99 - 1 CCAAUAAAAGCAAUCAA-ACUCCGCAAAAAUGUUGCAAGUGGCUGGCGAAGGCCGCCCGGUC----CCCAAAGUACUUGCAACAAAGCCAUUCGCAUCGGUUC---C .................-...(((......(((((((((((((.(((....)))))).((..----.)).....))))))))))..((.....))..)))...---. ( -28.20) >DroSim_CAF1 5516 100 - 1 CCAAUAAAAGCAAUCAAAACUCCGCAAAAAUGUUGCAAGUGGCUGGCGAAGGCCGCCCGGUC----CCCAAAGUACUUGCAACAAAGCCAUUCGCAUCGGUUC---C .....................(((......(((((((((((((.(((....)))))).((..----.)).....))))))))))..((.....))..)))...---. ( -28.20) >DroEre_CAF1 7086 100 - 1 CCAAUAAAAGCAAUCAAAACUCCGCAGAAAUGUUGCAAGUGGCUGGCGAAGGCCACCCGGUC----CCCAAAGUACUUGCAACAAAGCAAUUCGCAUCGCUUC---C .......((((...................((((((((((((.((((....)))).))((..----.)).....))))))))))..((.....))...)))).---. ( -30.10) >DroYak_CAF1 6629 103 - 1 CCAAUAAAAGCAAUCAAAACUCCGCAGAAAUGUUGCAAGUGGCUGGCGAAGGCCACCCGGUC----CCCAAAGUACUUGCAACAAAGCAAUUCGCAUCGGUUCAUUC .....................(((......((((((((((((.((((....)))).))((..----.)).....))))))))))..((.....))..)))....... ( -28.70) >DroAna_CAF1 8643 104 - 1 GCAAUAAAAGUAAUCAAAACUCAGCUCAAAUGCUGCAAGUGGCCAGCAAAGGCCAUCCAGGCAGGAUCUAAAGUAUUGGCAACAAAGCGAUUCGCAUUCAUUC---G .........((((((.......((.((...((((....((((((......))))))...)))).)).))...((.(((....))).)))))).))........---. ( -25.30) >consensus CCAAUAAAAGCAAUCAAAACUCCGCAGAAAUGUUGCAAGUGGCUGGCGAAGGCCACCCGGUC____CCCAAAGUACUUGCAACAAAGCCAUUCGCAUCGGUUC___C ..............................((((((((((((.((((....)))).))((.......)).....))))))))))..((.....))............ (-23.50 = -23.58 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:10 2006