Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,796,242 – 8,796,341 |
Length | 99 |
Max. P | 0.807472 |
Location | 8,796,242 – 8,796,341 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 70.99 |
Mean single sequence MFE | -32.90 |
Consensus MFE | -15.69 |
Energy contribution | -16.50 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.11 |
Mean z-score | -1.78 |
Structure conservation index | 0.48 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.807472 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8796242 99 + 22407834 CCUCGUGGAGAAACAAUGAUGGGUAAUAGAAGCUAGU---------------CCUU-AUUAUGAGUGCUACACCCGUGUGCACUCGAGA----GCCAGGCAAAGGGUUCAUCAUCAUCA ((....)).......((((((((((((((........---------------..))-)))))((((((.(((....)))))))))..((----(((........))))).))))))).. ( -26.70) >DroPse_CAF1 16935 119 + 1 UUUCCAUUGCAUUUGGAACAAUGAUGAGCUGCGGCUGUUGGUCCUUCUUACUCCUUGAAAGUGAGUGCUACACCCGUGUGCACUCGAGUGCCAGCCAGCCAAAGGGUUCAUCAUCAGCA .(((((.......)))))..((((((((((..(((((((((..((((((.(.....).))).((((((.(((....))))))))))))..)))).)))))....))))))))))..... ( -44.30) >DroSec_CAF1 4164 99 + 1 CCUCAUGGAGAAACAAUGAUGGGUAAUAGAAGCUAGU---------------CCUU-AUUAUGAGUGCUACACCCGUGUGCACUCGAGA----GCCAGGCAAAGGGUUCAUCAUCAUCA ((....)).......((((((((((((((........---------------..))-)))))((((((.(((....)))))))))..((----(((........))))).))))))).. ( -26.70) >DroEre_CAF1 5690 99 + 1 CCUCGUGGAGAAACAAUGAUGGGUAAUAGAAGCUAGU---------------CCUU-AUUAUGAGUGCUACACCCGUGUGCACUCGAGA----GCCAGGCAAAGGGUUCAUCAUCAUCA ((....)).......((((((((((((((........---------------..))-)))))((((((.(((....)))))))))..((----(((........))))).))))))).. ( -26.70) >DroYak_CAF1 5545 99 + 1 CCUCGUGAAGAAACAAUGAUGGGUAAUAGAAGCUAGU---------------CCUU-AUUAUGAGUGCUACACCCGUGUGCACUCGAGA----GCCAGGCAAAGGGUUCAUCACCAUCA ....((......))..(((((((((((((........---------------..))-)))))((((((.(((....)))))))))((((----(((........))))).)).)))))) ( -28.70) >DroPer_CAF1 17204 119 + 1 UUUCCAUUGCAUUUGGAACAAUGAUGAGCUGCGGCUGUUGGUCCUUCUUACUCCUUGAAAGUGAGUGCUACACCCGUGUGCACUCGAGUGCCAGCCAGCCAAAGGGUUCAUCAUCAGCA .(((((.......)))))..((((((((((..(((((((((..((((((.(.....).))).((((((.(((....))))))))))))..)))).)))))....))))))))))..... ( -44.30) >consensus CCUCGUGGAGAAACAAUGAUGGGUAAUAGAAGCUAGU_______________CCUU_AUUAUGAGUGCUACACCCGUGUGCACUCGAGA____GCCAGGCAAAGGGUUCAUCAUCAUCA .................(((((........................................((((((.(((....)))))))))((......(((........)))...)).))))). (-15.69 = -16.50 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:09 2006