Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,791,563 – 8,791,683 |
Length | 120 |
Max. P | 0.981254 |
Location | 8,791,563 – 8,791,683 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -35.17 |
Consensus MFE | -35.57 |
Energy contribution | -35.80 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.05 |
Mean z-score | -2.43 |
Structure conservation index | 1.01 |
SVM decision value | 1.88 |
SVM RNA-class probability | 0.981254 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8791563 120 - 22407834 GUGGGCACUUUAUGAAUAUUGGGCGUUCUUUUGAUUUUCUGUUUUCGUUUCGAAUUAGGUUUAAAGCCGUCUUCAACGGAACCAGAUUUUGGUGGAGGGCCCCUUCAAUGUUUUAUGAAA ........((((((((((((((((.((((.(..(...((((.(((((((..(((...(((.....)))...)))))))))).))))..)..).)))).))))....)))).)))))))). ( -33.30) >DroSec_CAF1 94253 120 - 1 GUGGGCACUUUAUGAAUAUUGGGCGUUCCUUUGAUUUUCUGUUUUCGUUUCGAAUUAGGUUUAAAGCCGUCUUCAACGGAAACAGAUUUUGGUGGAGGGCCCCUUCAAUGUUUUAUGAAC ........((((((((((((((((.((((.(..(...((((((((((((..(((...(((.....)))...)))))))))))))))..)..).)))).))))....)))).)))))))). ( -39.00) >DroSim_CAF1 97831 120 - 1 GUGGGCACUUUAUGAAUAUUUGGCGUUCCUUUGAUUUUCUGUUUUCGUUUCGAAUUAGGUUUAAAGCCGUCUUCAACGGAAACAGAUUUUGGUGGAGGGCUCCUUCAAUGUUUUAUGAAC ........((((((((((((.(((.((((.(..(...((((((((((((..(((...(((.....)))...)))))))))))))))..)..).)))).))).....)))).)))))))). ( -33.20) >consensus GUGGGCACUUUAUGAAUAUUGGGCGUUCCUUUGAUUUUCUGUUUUCGUUUCGAAUUAGGUUUAAAGCCGUCUUCAACGGAAACAGAUUUUGGUGGAGGGCCCCUUCAAUGUUUUAUGAAC ........((((((((((((((((.((((.(..(...((((((((((((..(((...(((.....)))...)))))))))))))))..)..).)))).))))....)))).)))))))). (-35.57 = -35.80 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:06 2006