Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,791,174 – 8,791,294 |
Length | 120 |
Max. P | 0.939553 |
Location | 8,791,174 – 8,791,294 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -25.13 |
Consensus MFE | -24.50 |
Energy contribution | -24.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.28 |
Structure conservation index | 0.97 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939553 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8791174 120 - 22407834 GAAUAUGAGAACUACCACCUCCAAGAGGUCCUGGUCUCAGGCCAAGCUAAUUAGCACCCAUAAAACGCACAUAAAUAUGCGCAGCCCAAUAAAUUAUAAAUUAUGACUUUGGCACCACCA .....(((((.(((..(((((...)))))..)))))))).((((((((....)))...........((.(((....))).))..........................)))))....... ( -26.40) >DroSec_CAF1 93857 120 - 1 AAAUAUGAGAACUCCCACCUCCAAGAGGUCCUGGUCUCAGGCCAAGCUAAUUAGCACCCAUAAAACGCACAUAAAUAUGCGCAGCCCAAUAAAUUAUAAAUUAUGACUUUGGCACCACCA .....(((((.((...(((((...)))))...))))))).((((((((....)))...........((.(((....))).))..........................)))))....... ( -24.50) >DroSim_CAF1 97441 120 - 1 GAAUAUGAGAACUCCCACCUCUAAGAGGUCCUGGUCUCAGGCCAAGCUAAUUAGCACCCAUAAAACGCACAUAAAUAUGCGCAGCCCAAUAAAUUAUAAAUUAUGACUUUGGCACCACCA .....(((((.((...(((((...)))))...))))))).((((((((....)))...........((.(((....))).))..........................)))))....... ( -24.50) >consensus GAAUAUGAGAACUCCCACCUCCAAGAGGUCCUGGUCUCAGGCCAAGCUAAUUAGCACCCAUAAAACGCACAUAAAUAUGCGCAGCCCAAUAAAUUAUAAAUUAUGACUUUGGCACCACCA .....(((((.((...(((((...)))))...))))))).((((((((....)))...........((.(((....))).))..........................)))))....... (-24.50 = -24.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:05 2006