Locus 3085

Sequence ID 2L_DroMel_CAF1
Location 8,790,824 – 8,790,934
Length 110
Max. P 0.948044
window4915

overview

Window 5

Location 8,790,824 – 8,790,934
Length 110
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 80.87
Mean single sequence MFE -41.80
Consensus MFE -29.36
Energy contribution -31.86
Covariance contribution 2.50
Combinations/Pair 1.09
Mean z-score -2.21
Structure conservation index 0.70
SVM decision value 1.38
SVM RNA-class probability 0.948044
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8790824 110 - 22407834
GAGGAAAAAGAUCCCAUCCUGAGCUAUCC---GCUAUCCUAUCCCUGGAGUG-------AAGUGGCUGCCUGGAUGGUUGGAUGGCCAGAGUGGCGGAGGAUGGGGCGAACUAAUCCCCA
(.(((....(.(((((((((..((((..(---((((((((((((..(((((.-------.....))).)).)))))...)))))))..)..))))..)))))))))).......))).). ( -42.60)
>DroSec_CAF1 93512 110 - 1
AAGGAAAAAGAUCCCAUCCUGAGCUAUCC---GCUAUCCUAUCCCUGGAGUG-------AAGUGGCUGCCUGGAUGGUUGGAUGGCCAGAGUGGCGGAGGAUGGGGCGAACUAAUCCCCA
..(((....(.(((((((((..((((..(---((((((((((((..(((((.-------.....))).)).)))))...)))))))..)..))))..)))))))))).......)))... ( -42.20)
>DroSim_CAF1 97096 110 - 1
AAGGAAAAAGAUCCCAUCCUGAGCUAUCC---GCUAUCCUAUCCCUGGAGUG-------AAGUGGCUGCCUGGAUGGUUGGAUGGCCAGAGUGGCGGAGGAUGGGGCGAACUAAUCCCCA
..(((....(.(((((((((..((((..(---((((((((((((..(((((.-------.....))).)).)))))...)))))))..)..))))..)))))))))).......)))... ( -42.20)
>DroAna_CAF1 117986 107 - 1
AAGGA-AAUAAUCCCAUACUUCCAUACGCGGUGCUAUCCUAUCCCUGGAGUAGCCGGGUAAGUGG--GAUUGGA--GUUGGAGGUCU--------GGGGUUUGGGGUGAACUAAUCCCUA
.....-...(((((((.(((((((...((....(((((((((.(((((.....)))))...))))--)).))).--))))))))).)--------)))))).(((((......))))).. ( -40.20)
>consensus
AAGGAAAAAGAUCCCAUCCUGAGCUAUCC___GCUAUCCUAUCCCUGGAGUG_______AAGUGGCUGCCUGGAUGGUUGGAUGGCCAGAGUGGCGGAGGAUGGGGCGAACUAAUCCCCA
..(((......(((((((((..(((((.....((((((((((((..(((((.............))).)).)))))...)))))))....)))))..)))))))))........)))... (-29.36 = -31.86 +   2.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:04 2006