Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,785,945 – 8,786,041 |
Length | 96 |
Max. P | 0.969641 |
Location | 8,785,945 – 8,786,041 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.07 |
Mean single sequence MFE | -39.05 |
Consensus MFE | -33.16 |
Energy contribution | -33.40 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -2.03 |
Structure conservation index | 0.85 |
SVM decision value | 1.65 |
SVM RNA-class probability | 0.969641 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8785945 96 - 22407834 CACUCUGACGGCUCGAUGGCAUCAUUAACGCAUAUUCCGGACUGCCUUUCGGGCACAGGCAGACACCCGGAUCC------------------GGCAA-CCAGGAUCCGGGAUGCA----- ....(((...((((((.((((((................)).))))..)))))).)))(((....(((((((((------------------.....-...))))))))).))).----- ( -39.09) >DroSec_CAF1 88656 96 - 1 CACUCUGACGGCUCGAUGGCAUCAUUAACGCAUAUUCCGGACUGCCUUUCGGGCACAGGCAGACACCCGGAUCC------------------GGCAG-CCAGGAUCCGGGAUGCA----- ....(((...((((((.((((((................)).))))..)))))).)))(((....(((((((((------------------.....-...))))))))).))).----- ( -39.09) >DroSim_CAF1 92180 96 - 1 CACUCUGACGGCUCGAUGGCAUCAUUAACGCAUAUUCCGGACUGCCUUUCGGGCACAGGCAGACACCCGGAUCC------------------GGCAG-CCAGGAUCCGGGAUGCA----- ....(((...((((((.((((((................)).))))..)))))).)))(((....(((((((((------------------.....-...))))))))).))).----- ( -39.09) >DroEre_CAF1 95194 96 - 1 CACUCUGACGGCUCGAUGGCAUCAUUAACGCAUAUCCCGGACUGCCUUUCGGGCACAGGCAGACACCCGGAUCC------------------GGCGA-CCAGGAUCCGGAAUGCA----- ....(((...((((((.((((((................)).))))..)))))).)))(((.....((((((((------------------.....-...))))))))..))).----- ( -35.39) >DroYak_CAF1 93838 120 - 1 CACUCUGACGGCUCGAUGGCAUCAUUAACGCAUAUUCCGGACUGCCUUUCGGGCACAGGCAGACACCCGGAUCCCAGGCAAUCCGGCAAUCCGGCAAUCCGGGGUCCAGGAUGCAGCACG ....(((...((((((.((((((................)).))))..)))))).)))(((....((.(((((((.((....((((....))))....))))))))).)).)))...... ( -42.59) >consensus CACUCUGACGGCUCGAUGGCAUCAUUAACGCAUAUUCCGGACUGCCUUUCGGGCACAGGCAGACACCCGGAUCC__________________GGCAA_CCAGGAUCCGGGAUGCA_____ ....(((...((((((.((((((................)).))))..)))))).)))(((....(((((((((...........................))))))))).)))...... (-33.16 = -33.40 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:53 2006