Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,768,162 – 8,768,282 |
Length | 120 |
Max. P | 0.688633 |
Location | 8,768,162 – 8,768,282 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.22 |
Mean single sequence MFE | -36.18 |
Consensus MFE | -29.74 |
Energy contribution | -29.60 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.24 |
Mean z-score | -2.06 |
Structure conservation index | 0.82 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.688633 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8768162 120 + 22407834 AAGCCAACGGCAAACUGGUCAAUUACACUCUGGUAGUUCACGGCAGCUUCAUCGUUCAUGCUCCACGCGCCACCAGUGAAUUCCAGACGACCCUCGUUCACCAAUGUUUUGACCAGUUUC ..(((...)))(((((((((((..(((.(((((.(((((((((((((......)))...((.....)))))....))))))))))))((.....))........))).))))))))))). ( -37.80) >DroSec_CAF1 72408 120 + 1 AAGCCAACGGCGAAUUGAUCAAUUACACUCUGGUAGUUCACGGCAGCUUCAUCGUUCAUGCUCCAAGCGCCACCAGUGAAUUCCAGACGACCCUCGUUCACCAAUGUCCUGACCAGUUUC ..(((...)))((((((.(((...(((.(((((.((((((((((.((((....((....))...)))))))....))))))))))))((.....))........)))..))).)))))). ( -29.40) >DroSim_CAF1 75038 120 + 1 AAGCCAACGGCAAACUGGUCAAUGACACUCUGGUAGUUCACGGCAGCUUCGUCGUUCAUGCUCCAAGCGCCACCAGUGAAUUCCAGACGACCCUCGUUCACCAAUGUCCUGACCAGUUUC ..(((...)))((((((((((..((((.(((((.((((((((((.((((.(..((....))..))))))))....))))))))))))((.....))........)))).)))))))))). ( -42.50) >DroEre_CAF1 76475 120 + 1 AAGCCAACGGCGAACUGGUCAAUUACACUCUGGUAGUUCACGGCAGCUUCAUCGUUCAUGCUCCAGGCGCCACCCGUGAAUUCCAGACGACCCUCGUUCACCAAAGUCCUGACCAGCUGC ..(((...)))...(((((((...((..(((((.(((((((((..((((....((....))...)))).....))))))))))))))((.....)).........))..))))))).... ( -35.50) >DroYak_CAF1 75736 120 + 1 AAGCCAACGGCAAACUGGUCGAUCACACUCUGGUAGUUCACGGCAGCCUCAUCGUUCAUGCUCCAGGCGCCACCGGUGAAUUCCAGACGACCCUCGUUCACCAGAGUCCUGACCAGCUGC ..(((...)))...(((((((.....((((((((((((((((((.((((....((....))...)))))))....)))))))...((((.....)))).))))))))..))))))).... ( -41.00) >DroAna_CAF1 73650 120 + 1 AAGCCUACGGUGAACUGGUCAAUCACACUCUGGUAGUUCACGGCAGCCUCAUCGUUCAUGCUCCAGCCGCCGCCGGUAAACUCCAUGCGGCCUUCGUUGACAAGUUUCUUGACUAUAUGC ..((.((..(((((((.((((((......((((.(((..((((........))))....)))))))..(((((.((......))..)))))....)))))).)))))....))..)).)) ( -30.90) >consensus AAGCCAACGGCAAACUGGUCAAUUACACUCUGGUAGUUCACGGCAGCUUCAUCGUUCAUGCUCCAGGCGCCACCAGUGAAUUCCAGACGACCCUCGUUCACCAAUGUCCUGACCAGUUGC ..(((...)))...(((((((.......(((((.((((((((((.((((....((....))...)))))))....))))))))))))((.....)).............))))))).... (-29.74 = -29.60 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:42 2006