Locus 3074

Sequence ID 2L_DroMel_CAF1
Location 8,766,646 – 8,766,766
Length 120
Max. P 0.590883
window4890

overview

Window 0

Location 8,766,646 – 8,766,766
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 88.92
Mean single sequence MFE -28.38
Consensus MFE -20.84
Energy contribution -21.12
Covariance contribution 0.28
Combinations/Pair 1.15
Mean z-score -1.69
Structure conservation index 0.73
SVM decision value 0.12
SVM RNA-class probability 0.590883
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8766646 120 + 22407834
UUGUAAAACUUACCGAAUUUUGAACAAUUGUCUCUUGAUCAUCAAGGGUUUCUAAAUCGGUUUUCAAGGAGUGAACUUUCUUAAAACGUUUGGGAACUUUCACAUUUGAUUCCUCCUCAU
...........(((((.(((.(((.......((((((.....)))))).))).))))))))..(((((..(((((..(((((((.....)))))))..))))).)))))........... ( -23.70)
>DroSec_CAF1 70907 118 + 1
CUGUAAAACUUACCGAAUUUUGAACAAUUGUGUCUUGAUCAUCAAGGGUUUCCAAAUCGGUUUUCAAGGAGUGAACCUUCUUGAAACGUUUGGGAACUUUCACGUUUGAUUCUUCCUC--
.....................((((((.((((.((((.....))))((((((((((.((...(((((((((.....))))))))).))))))))))))..)))).))).)))......-- ( -31.40)
>DroSim_CAF1 73535 120 + 1
CUUUAAAACUUACCGAAUUUUGAACAAUUGUCUCUUGAUCAUCUAGGGUUUCUAAAUCGGUUUUCAAGGAGUGAACCUUCUUGAAACGUUUGGGAACUUUCACGUUUGAUUCUUCCUCAU
..............(((((..((((....(((....))).....((((((((((((.((...(((((((((.....))))))))).))))))))))))))...)))))))))........ ( -26.20)
>DroEre_CAF1 74984 120 + 1
CUGUAAAACUCACCGAAUUUCGCACAAUUGUCUCUUGAUCAUCAAGGGCUUCCAAAUCGGUUUUCGAGGAGUGAACCUUCUUGAAACGCUUAGGAACAUUCACGUUAGAUUCUCUCUCAG
..............((((((.((......(((.((((.....)))))))((((.((.((...(((((((((.....))))))))).)).)).)))).......)).))))))........ ( -26.20)
>DroYak_CAF1 74226 120 + 1
CUGUAAAACUCACCGAGUUUUGCACAACUGUCUCUUGAUCAUCGAGGGGCUCUAGGUCGGUUUUCAAGGAGUGAACCUUCUUGAAACGUUUAGGAACAUUCAAGUUUGAUUCUUUCUCAU
.((((((((((...)))))))))).((((((((((((.....))))))))((((((.((...(((((((((.....))))))))).))))))))........)))).............. ( -34.40)
>consensus
CUGUAAAACUUACCGAAUUUUGAACAAUUGUCUCUUGAUCAUCAAGGGUUUCUAAAUCGGUUUUCAAGGAGUGAACCUUCUUGAAACGUUUGGGAACUUUCACGUUUGAUUCUUCCUCAU
.....((((..(((((.......((....))((((((.....))))))........)))))((((((((((.....)))))))))).))))(((((...((......))...)))))... (-20.84 = -21.12 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:41 2006