Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 879,522 – 879,642 |
Length | 120 |
Max. P | 0.740659 |
Location | 879,522 – 879,642 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.11 |
Mean single sequence MFE | -45.43 |
Consensus MFE | -31.22 |
Energy contribution | -32.45 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.30 |
Mean z-score | -1.73 |
Structure conservation index | 0.69 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.740659 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 879522 120 + 22407834 GAAAGUAGCUGGAGUCGCUGUUGUUGAUCAUCGCUCCGAAGGAAUGGCGGAAGCUCUCGCUGAAACCGAGAAUGCCCUUCACACGUAUCUGAUUCGCUCCGAGUGGCUCCAGCUGCAUAA ....((((((((((((((((..((.(((((.((....(((((....((....))(((((.......)))))....)))))...))....))))).))..).))))))))))))))).... ( -49.40) >DroPse_CAF1 7661 120 + 1 AAAAGUGGUUCGAGGCACUGGCGUUGAUCACCACCCCGAAAGUGUGGAAGAAGCUCUCGCUGAAGCCGAGGACACCUUUGACCCGAAUCUGGUCGCUGGCCAGAGGUUCCAAGUGAAUGU .((((..((((..(((..(((((..((((.((((..(....).))))..))...)).)))))..)))..))))..))))((((....((((((.....))))))))))............ ( -35.40) >DroSec_CAF1 7866 120 + 1 GGAAGUAGCUGGAGUCGCUGUUGUUGAUCAUCGCUCCGAAGGAAUGGCGGAAGCUCUCGCUGAAGCCGAGGAUUCCCUUCACACGUAUCUGACUCGCUCCAAGUGGCUCCAGCUGCAUAA ....(((((((((((((((.....((((((.((....(((((...(((....)))(((((....).)))).....)))))...))....))).))).....))))))))))))))).... ( -46.50) >DroEre_CAF1 11269 120 + 1 GAAAGUAGCUGGAGUCACUGUUGUUGAUCAUCGCCCCAAAGGAGUGGUGGAAGCUCUCGCUGAAGCCGAGGAUGCCCCUCACGCGUAUCUGAUCCGCUCCAAGUGGCUCCAGCCGCAGGA ....(..((((((((((((...((.(((((.(((((....)).(((((...(((....)))...)))((((.....)))))))))....))))).))....))))))))))))..).... ( -49.80) >DroYak_CAF1 7664 120 + 1 AGAAGUAGCUGGAGUCGCUGUUGUUGAUCAUCGCUCCGAAGGAGUGGUAGAAGCUCUCGCUGAAGCCGAGGAUGCCCCUCACACGUAUCUGAUCCGCUCCCAGUGGCUCCAGCUGCACAA ....((((((((((((((((..((.((((((((((((...))))))))(((.((....((....)).((((.....))))....)).))))))).))...)))))))))))))))).... ( -56.10) >DroAna_CAF1 8357 120 + 1 AGAAGUAGUUGGAGUCGCUGUUGUUGAUCACCGCCCCGUACGAGUGCCGGAAGCUCUCGCUGAAGCCAAGGAUGCCCUUCACCCGGAUCUGAUCAGUUCCGAGGGGGUCCAAGUUCAUCA .(((.(..((((..((((.((........)).))......((((.(.(....)).))))..))..))))((((.((((.....((((.((....)).)))))))).)))).).))).... ( -35.40) >consensus AAAAGUAGCUGGAGUCGCUGUUGUUGAUCAUCGCCCCGAAGGAGUGGCGGAAGCUCUCGCUGAAGCCGAGGAUGCCCUUCACACGUAUCUGAUCCGCUCCAAGUGGCUCCAGCUGCAUAA ....((((((((((((((((..((.(((((...............(((...(((....)))...)))((((.....)))).........))))).))..).))))))))))))))).... (-31.22 = -32.45 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:36 2006