Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,760,661 – 8,760,751 |
Length | 90 |
Max. P | 0.985969 |
Location | 8,760,661 – 8,760,751 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 75.52 |
Mean single sequence MFE | -25.53 |
Consensus MFE | -19.30 |
Energy contribution | -19.47 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.22 |
Mean z-score | -2.21 |
Structure conservation index | 0.76 |
SVM decision value | 2.03 |
SVM RNA-class probability | 0.985969 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8760661 90 + 22407834 CCGCAGUCACGUCACCAA---UUCCCUCCC--CCUCUCCUCGCCAGCCCACCCCUUCCAAUCCUCCGGACGAUGGGAUGCGGCUGCGGCAGCAAU ((((((((.((((.(((.---.........--.........(....)......(.(((........))).).))))))).))))))))....... ( -24.00) >DroPse_CAF1 85041 81 + 1 CCGCAGUCACAUCACAUACAUAUCUCUCUG--UCUCC---------C-UUCCUCUGUGUGUGCUUC--UCGAUGGGAUGCGACUGCGGCAGCAAU ((((((((.((((.((((((((........--.....---------.-......))))))))((..--.....)))))).))))))))....... ( -25.05) >DroSec_CAF1 64937 89 + 1 CCGCAGUCACGUCACCAA---UUCCCUCCC--CCCCUCCUCCACACC-CCUCUCUUCCACUCCUCGGGACGAUGGGAUGCGGCUGCGGCAGCAAU ((((((((.((((.(((.---.((((....--...............-.................))))...))))))).))))))))....... ( -27.02) >DroSim_CAF1 67593 78 + 1 CCGCAGUCACGUCACCAA---UUCCCUCCC-------------CACC-CCUCUCUUCCACUCCUCGGGACGAUGGGAUGCGGCUGCGGCAGCAAU ((((((((.((((.(((.---.((((....-------------....-.................))))...))))))).))))))))....... ( -27.41) >DroEre_CAF1 68798 84 + 1 CCGCAGUCACGUCACCAA---UCCCC-CUACAUCCCU------CCCC-CCUCUCUGCCACUCCUCCGGACGAUGGGUUGCGGCUGCGGCAGCAAU ((((((((.(((......---.....-..))......------..((-(.((((((.........)))).)).)))..).))))))))....... ( -19.92) >DroYak_CAF1 67780 90 + 1 CCGCAGUCACGUCACCAA---UUCCCUCUCCGCCCCC-CUUCGCCCC-UCCCUCUGCCAGUCCUGCGGACGAUGGGAUGCGGCUGCGGCAGCAAU ((((((((.((((.(((.---.....(((((((....-((..((...-.......)).))....))))).))))))))).))))))))....... ( -29.80) >consensus CCGCAGUCACGUCACCAA___UUCCCUCCC__CCCCU______CACC_CCCCUCUGCCACUCCUCCGGACGAUGGGAUGCGGCUGCGGCAGCAAU ((((((((.((((.(((....(((..........................................)))...))))))).))))))))....... (-19.30 = -19.47 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:32 2006