Locus 3068

Sequence ID 2L_DroMel_CAF1
Location 8,759,772 – 8,759,863
Length 91
Max. P 0.915861
window4880

overview

Window 0

Location 8,759,772 – 8,759,863
Length 91
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 92.53
Mean single sequence MFE -18.39
Consensus MFE -15.98
Energy contribution -15.70
Covariance contribution -0.28
Combinations/Pair 1.11
Mean z-score -1.94
Structure conservation index 0.87
SVM decision value 1.10
SVM RNA-class probability 0.915861
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8759772 91 - 22407834
UCCGUCGGCGUCCAAAUGCGGCGACCGCAGACACACGCAAAAAUUCUAAUUUCUCCACUCAGUAAAGAAACCCAAAAAAAAAAAAGGAAAA
(((....((((.....(((((...))))).....))))...........(((((..((...))..)))))...............)))... ( -16.50)
>DroPse_CAF1 83886 89 - 1
UCCGUCGGCGUCCAAAUGCGGCGACCGCAGACACACGCAAAAAUUCUAAUUUCUCCACUCAGUCGAGAGGCCAAAAAA--CGACAGGAAAA
(((((((((((.....(((((...))))).....))))................((.(((....))).))........--)))).)))... ( -25.00)
>DroSec_CAF1 64084 88 - 1
UCCGUCGGCGUCCAAAUGCGGCGACCGCAGACACACGCAAAAAUUCUAAUUUCUCCACUCAGUAAAGAAACCCCAAA---AAAAAGGAAAA
(((....((((.....(((((...))))).....))))...........(((((..((...))..))))).......---.....)))... ( -16.50)
>DroSim_CAF1 66737 89 - 1
UCCGUCGGCGUCCAAAUGCGGCGACCGCAGACACACGCAACAAUUCUAAUUUCUCCACUCAGUAAAGAAACCCAAAAA--AAAAAGGAAAA
(((((..((((.....(((((...))))).....)))).))........(((((..((...))..)))))........--.....)))... ( -16.60)
>DroEre_CAF1 67924 91 - 1
UCCGUCGGCGUCCAAAUGCGGCGACCGCAGACACACGCAAAAAUUCUAAUUUCUCCACUCAGUAAAGAACCCAAAAAAGAAAAAAGGAAAA
(((....((((.....(((((...))))).....))))...........(((((.......((.....)).......)))))...)))... ( -16.14)
>DroYak_CAF1 66857 87 - 1
UCCGUCGGCGUCCAAAUGCGGCGACCGCAGACACACGCAAAAAUUCUAAUUUCUCCACUCGGUAAGGAACCCGAAAA----AAAAGGAAAA
(((....((((.....(((((...))))).....))))....................((((........))))...----....)))... ( -19.60)
>consensus
UCCGUCGGCGUCCAAAUGCGGCGACCGCAGACACACGCAAAAAUUCUAAUUUCUCCACUCAGUAAAGAAACCCAAAAA__AAAAAGGAAAA
(((....((((.....(((((...))))).....))))............((((..((...))..))))................)))... (-15.98 = -15.70 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:31 2006