| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,758,518 – 8,758,634 |
| Length | 116 |
| Max. P | 0.836120 |
| Location | 8,758,518 – 8,758,634 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.67 |
| Mean single sequence MFE | -32.30 |
| Consensus MFE | -20.31 |
| Energy contribution | -22.26 |
| Covariance contribution | 1.95 |
| Combinations/Pair | 1.04 |
| Mean z-score | -3.00 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.836120 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8758518 116 - 22407834 AAAAAAAACGCGGCAACAUCACGAACGGCUUAUUAUAAUCGCGAAAAAAAUGUUGAUGAUAAUGA----GCCGCUGAUGGCGAUGAUGAUGAGCACAUGCCGCGUUUAAUUAUUAUGUCU .....((((((((((.(((((....(((((((((((.((((((.......)).)))).)))))))----)))).)))))((...........))...))))))))))............. ( -38.80) >DroSec_CAF1 62828 114 - 1 AAAAA-AACGCGGAAACAUCACGAACGGCUUAUUAUAAUCGCGAAA-AAAUGUUGAUGAUAAUUA----GCCGCUGAUGGCGAUGAUGAUGAGCACAUGCCGCGUUUAAUUAUUAUGUCU ....(-(((((((........(....)(((((((((.(((((.(..-....((((((....))))----))......).))))).))))))))).....))))))))............. ( -32.40) >DroSim_CAF1 65506 115 - 1 AAAAAAAGCGCGGCAACAUCACGAACGGCUUAUUAUAAUCGCGAAA-AAAUGUUGAUGAUAAUGA----GCCGCUGAUGGCGAUGAUGAUGAGCACAUGCCGCGUUUAAUUAUUAUGUCU .....((((((((((.(((((....(((((((((((.((((((...-...)).)))).)))))))----)))).)))))((...........))...))))))))))............. ( -39.30) >DroEre_CAF1 66653 98 - 1 AAAAAAAAAGCGGCAGCAGCACGAACGGCUUAUUAUAAUCGCGAAA-AAAUGUUG---------------------AUGGCGAUGAUGAUGAGCACAUGCCGCGUUUAAUUAUUAUGCCU .........((((((......(....)(((((((((.(((((.(..-........---------------------.).))))).)))))))))...))))))................. ( -27.00) >DroYak_CAF1 65534 114 - 1 -AAAAAAACCCGACAACUGCACGAACGGCUUAUUAUAAUCGCGAAA-AAAUGUUGAUGAUAAUGA----GCCGCUGAUGGCGAUGAUGAUGAGCACAUGCCGCGUUUAAUUAUCAUGUCU -..........(((...(((.....(((((((((((.((((((...-...)).)))).)))))))----))))......)))((((((((((((.(.....).)))).))))))))))). ( -30.60) >DroAna_CAF1 64690 106 - 1 ----AAAGCU---CCACGGCGCGAGCGGCUUAUUAUAAUCGCGGAA-AAAUAAUGAUAAUAAUAAUUACGGCGCU------GAUGAUGACGAGCACAUGCCGUGUUUAAUUAUCAUGUCU ----......---...((((((..(..(.(((((((.((((.....-......)))).))))))))..).)))))------)(((((((.((((((.....))))))..))))))).... ( -25.70) >consensus AAAAAAAACGCGGCAACAGCACGAACGGCUUAUUAUAAUCGCGAAA_AAAUGUUGAUGAUAAUGA____GCCGCUGAUGGCGAUGAUGAUGAGCACAUGCCGCGUUUAAUUAUUAUGUCU .....((((((((((......(....)(((((((((.(((((.....................................))))).)))))))))...))))))))))............. (-20.31 = -22.26 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:29 2006