Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,757,513 – 8,757,621 |
Length | 108 |
Max. P | 0.520839 |
Location | 8,757,513 – 8,757,621 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.36 |
Mean single sequence MFE | -18.94 |
Consensus MFE | -14.98 |
Energy contribution | -14.90 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.13 |
Mean z-score | -1.98 |
Structure conservation index | 0.79 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.520839 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8757513 108 - 22407834 AUUCAUUAAUUUACAUUAAAAUGUAAUUAGCGGUCAAAUAAGUGGCAGGAA-AAUACUGAAACCGCAA-AAUAUGCGAGCUGCCAUUAAAG----AAGGGA---GCAACAAAAAA---AA .(((.(((((((((((....))))))...(((((.......((..(((...-....)))..))((((.-....)))).))))).))))).)----))....---...........---.. ( -18.80) >DroPse_CAF1 82036 117 - 1 AUUCAUUAAUUUACAUUAAAAUGUAAUUAGCGGUCAAAUAAGUGGCAGGAAAAAAACUGAAACCGCAAAAAUAUGCCAACUGCCAUAAAAGCGGAAAGGAAAGAGCAAAAAAAAA---GC ..........((((((....))))))...(((((.......(((((((........)))...))))........)))..((((.......))))..........)).........---.. ( -17.46) >DroSec_CAF1 61832 108 - 1 AUUCAUUAAUUUACAUUAAAAUGUAAUUAGCGGUCAAAUAAGUGGCAGGAA-AAUACUGAAACCGCAA-AAUAUGCGAGCUGCCAUUAAAG----AAGGGA---GCAACACAAAA---AA ..((.((((((.((((....)))))))))).))........(((.(((...-....)))....((((.-....)))).(((.((.......----..)).)---))..)))....---.. ( -18.90) >DroYak_CAF1 64530 113 - 1 AUUCAUUAAUUUACAUUAAAAUGUAAUUAGCGGUCAAAUAAGUGGCAGGAA-AACACUGAAACCGCAA-AAUAUGCGAGCUGCCAUUAAAG----AAGGGAAG-GCAACAAAAACAGAAA .(((......((((((....))))))...((..((.....(((((((((..-..)........((((.-....))))..))))))))....----....))..-))..........))). ( -20.22) >DroAna_CAF1 62132 111 - 1 AUUCAUUAAUUUACAUUAAAAUGUAAUUAGCGGUCAAAUAAGUGGCAGGAAAAAUACAGAAACCGCAAAAAUAUGCGAGCUGCCAUAAAAA----AUGGGG---GAA--AAAACCAGCCA ..((.((((((.((((....)))))))))).)).........((((.((..............((((......))))..((.((((.....----)))).)---)..--....)).)))) ( -20.80) >DroPer_CAF1 78401 117 - 1 AUUCAUUAAUUUACAUUAAAAUGUAAUUAGCGGUCAAAUAAGUGGCAGGAAAAAAACUGAAACCGCAAAAAUAUGCCAACUGCCAUAAAAGCGGAAAGGAAAGAGCAAAAAAAAA---GA ..........((((((....))))))...(((((.......(((((((........)))...))))........)))..((((.......))))..........)).........---.. ( -17.46) >consensus AUUCAUUAAUUUACAUUAAAAUGUAAUUAGCGGUCAAAUAAGUGGCAGGAA_AAUACUGAAACCGCAA_AAUAUGCGAGCUGCCAUAAAAG____AAGGGA___GCAACAAAAAA___AA .(((......((((((....))))))...(((((.......((..(((........)))..))((((......)))).)))))...............)))................... (-14.98 = -14.90 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:26 2006