| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,752,143 – 8,752,257 |
| Length | 114 |
| Max. P | 0.911459 |
| Location | 8,752,143 – 8,752,257 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 94.71 |
| Mean single sequence MFE | -31.43 |
| Consensus MFE | -28.53 |
| Energy contribution | -28.20 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.911459 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8752143 114 + 22407834 UGGUCGGCGAGGCUGCCAAAUUGGAUAGAACGAUUGAAUUGAGCAGCGCCCUUAUAAGGAAAAUGAUGCCCCAGUCGUUUUCCAAAAAUUCAUUUGGAUUAAAUAAAAUAAGAA .....(((...(((((..((((.(((......))).))))..))))))))(((((..((((((((((......))))))))))...(((((....))))).......))))).. ( -32.10) >DroSec_CAF1 56382 112 + 1 UGGUCGGUGAGGCUGCCAAAUUGGAUAGAACGAUUGAAUUGAGCAGCGCCCCUAUAAGGAAUACGCUGC--CAGUCGUUUUCCAAAAAUUCAUUUGGAUUAAAUAAAACAAGUA (((.(((.....))))))..(((((..(((((((((......((((((..((.....))....))))))--)))))))))))))).(((((....))))).............. ( -31.10) >DroSim_CAF1 59440 112 + 1 UGGUCGGUGAGGCUGCCAAAUUGGAUAGAACGAUUGAAUUGAGCAGCGCCCCUAUAAGGAAUACGCUGC--CAGUCGUUUUCCAAAAAUUCAUUUGGAUUAAAUAAAACAAGAA (((.(((.....))))))..(((((..(((((((((......((((((..((.....))....))))))--)))))))))))))).(((((....))))).............. ( -31.10) >consensus UGGUCGGUGAGGCUGCCAAAUUGGAUAGAACGAUUGAAUUGAGCAGCGCCCCUAUAAGGAAUACGCUGC__CAGUCGUUUUCCAAAAAUUCAUUUGGAUUAAAUAAAACAAGAA (((.((((...)))))))..(((((..(((((((((......((((((..((.....))....))))))..)))))))))))))).(((((....))))).............. (-28.53 = -28.20 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:22 2006