Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 878,948 – 879,066 |
Length | 118 |
Max. P | 0.684794 |
Location | 878,948 – 879,066 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 77.80 |
Mean single sequence MFE | -46.49 |
Consensus MFE | -19.30 |
Energy contribution | -19.97 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.25 |
Mean z-score | -2.33 |
Structure conservation index | 0.42 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.684794 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 878948 118 - 22407834 AUUCACCGGGACUCAAACAGUCGGCUAUGGUGAAGCACUUCACCGUCCAACCCAUUCCGUGCGAGCAGCACGGUUACGUCCUUGACCUGGGUUCCAUGGCCAGGAACUCCGUGCGGCG ..((.((((((((.....))))((..((((((((....))))))))))........))).).))((.((((((.....((((.(.(((((...))).))).))))...)))))).)). ( -43.20) >DroPse_CAF1 7093 118 - 1 AGGCGGCCAGCUACAAGCUGCCGCCGAAUGUGAAGCACUUCACCGUCCAACCCAUUCCCUGCGAGCAGCAGGGCCACAUCCUGGACCUUGGUCAUCUCAAUCGCAACACCUUGCGCCG .((((((.(((.....)))))))))((..(((((....))))).(((((.......((((((.....))))))........))))).....))........(((((....)))))... ( -43.56) >DroEre_CAF1 10695 118 - 1 GCUCCCCGGGACUCAAGCAGUCGGCUAUGGUGAAGCACUUCACCGUCCAAACCAUUCCGUGCGAGCAGCACGGCUACGUCCUGGACCUGGGCUCCUUGCCCAGGAACACCCUGCGCCG ((...(((((((...(((....((..((((((((....)))))))))).........(((((.....))))))))..))))))).(((((((.....)))))))........)).... ( -52.50) >DroYak_CAF1 7090 118 - 1 CCUCCCCGGGACUCAAGCAGGCGGCGAUGGUGAAGCACUUCACCGUCCAACCCAUUCCCUGCGAGCAGCACGGUUACGUCCUGGACUUGGGUUCCCUGGCCAGGAACACCGUGCGGCG (((....)))......(((((.((.(((((((((....)))))))))....))....)))))..((.(((((((....((((((.((.((....)).))))))))..))))))).)). ( -53.80) >DroAna_CAF1 7783 118 - 1 AAGUUCCGGGCUUCAAGCAGCCAGCGAUGGUCAAGCACUUCACCGUGCAGCCCAUUCCCUGCGAGCAGCAGAGCUACGUCCUGGAACUGGGUCCGCUCAUGUGGAACACCCUGCGAAA .(((((((((((.......((((....))))...((((......))))))))).....((((.....))))...........))))))((((((((....)))))...)))....... ( -42.50) >DroPer_CAF1 7096 118 - 1 AGGCGGCCAGCUACAAGCUGCCGCCGAAUGUCAAGCACUUCACCGUCCAACCCAUUCCCUGCGAGCAGCAGGGCCACAUCCUGGACCUUGGUCAUCUCAAUCGCAACACCUUGCGCCG .((((((.(((.....)))))))))((((((((((.........(((((.......((((((.....))))))........)))))))))).))).))...(((((....)))))... ( -43.36) >consensus ACGCCCCGGGACUCAAGCAGCCGGCGAUGGUGAAGCACUUCACCGUCCAACCCAUUCCCUGCGAGCAGCACGGCUACGUCCUGGACCUGGGUCCCCUCACCAGGAACACCCUGCGCCG .....((.((.........(((......((((((....))))))(((((.......((((((.....))))))........)))))...))).......)).)).............. (-19.30 = -19.97 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:35 2006