Locus 3059

Sequence ID 2L_DroMel_CAF1
Location 8,748,566 – 8,748,680
Length 114
Max. P 0.776978
window4867

overview

Window 7

Location 8,748,566 – 8,748,680
Length 114
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 81.08
Mean single sequence MFE -24.03
Consensus MFE -12.22
Energy contribution -13.38
Covariance contribution 1.17
Combinations/Pair 1.00
Mean z-score -2.69
Structure conservation index 0.51
SVM decision value 0.55
SVM RNA-class probability 0.776978
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8748566 114 - 22407834
UCUUGAGUGGGGCUGUUUAGGGACGACCCACAGGAAAGGCAAUUUUUAUUGGAUUUUAUUUUUAUUGUCCUACAUAAAUGUAUUUAU-UUAUGACAUUUCUUGCU-AUUUUU-UUU--U
......(((((..((((....)))).)))))(((((.(((((........((((..((....))..))))..((((((((....)))-))))).......)))))-.)))))-...--. ( -26.70)
>DroPse_CAF1 71536 112 - 1
UCCUUGGUUG---CU---GGGGGGUUCCCGGAGGAAAGGCAACUUUUAUUGGAUUUUAUUUUUAUUGUCCUACAUAAAUUUAUUUAUUUUAUGGUAUUUCUUGCU-AUUUAUUUUUUCA
(((((((..(---((---....)))..)).)))))..(((((........((((..((....))..))))..((((((.........)))))).......)))))-............. ( -21.20)
>DroSec_CAF1 52875 104 - 1
CCUUGA-------------GGGGCGGCCCACAGGAAAGGCAAUUUUUAUUGGAUUUUAUUUUUAUUGUCCUACAUAAAUGUAUUUAU-UUAUGACAUUUCUUGCU-GUUUUUUUUUUCU
.((((.-------------(((....))).))))...(((((........((((..((....))..))))..((((((((....)))-))))).......)))))-............. ( -22.60)
>DroSim_CAF1 55993 103 - 1
CCUUGA-------------GGGGCGACCCACAGGAAAGGCAAUUUUUAUUGGAUUUUAUUUUUAUUGUCCUACAUAAAUGUAUUUAU-UUAUGACAUUUCUUGCU-GUUUUU-UUUUCU
.((((.-------------(((....))).))))...(((((........((((..((....))..))))..((((((((....)))-))))).......)))))-......-...... ( -25.10)
>DroYak_CAF1 55160 118 - 1
CCUUGAGUUGGGCUGUUUAGGGGCGACCCACAGGAAAGGCAGUUUUUAUUGGAUUUUAUUUUUAUUGUCCUACAUAAAUGUAUUUAU-UUAUGGCAUUUCUUGUUUGUUUUUUUUUUUU
(((......))).......(((....)))((((((((.((..........((((..((....))..))))..((((((((....)))-))))))).))))))))............... ( -28.50)
>DroPer_CAF1 67954 107 - 1
UCCUUGGUUC---CC--------UUUCCCGGAGGAAAGGCAACUUUUAUUGGAUUUUAUUUUUAUUGUCCUACAUAAAUUUAUUUAUUUUAUGGUAUUUCUUGCU-AUUUAUUUUUUCA
.....((((.---((--------(((((....))))))).))))(((((.((((..((....))..))))...)))))............((((((.....))))-))........... ( -20.10)
>consensus
CCUUGAGUUG_________GGGGCGACCCACAGGAAAGGCAAUUUUUAUUGGAUUUUAUUUUUAUUGUCCUACAUAAAUGUAUUUAU_UUAUGACAUUUCUUGCU_AUUUUUUUUUUCU
...................(((....))).(((((((.............((((..((....))..))))..((((((((....))).)))))...)))))))................ (-12.22 = -13.38 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:19 2006