Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,747,553 – 8,747,645 |
Length | 92 |
Max. P | 0.555074 |
Location | 8,747,553 – 8,747,645 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 83.52 |
Mean single sequence MFE | -29.32 |
Consensus MFE | -20.94 |
Energy contribution | -21.97 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.08 |
Mean z-score | -1.75 |
Structure conservation index | 0.71 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555074 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8747553 92 + 22407834 GGGCGUGGG--------UGGGUGUGAGGGAAU-CCUUUUGUUCUUAUUGGAGCACGCGCUGCCAAAUGCCAAUACAAAUGGCGCAAAAAAGGACACGCGGC ..(((((((--------..(((((((((....-))))..(((((....))))))))).)..))....((((.......))))...........)))))... ( -31.40) >DroPse_CAF1 70321 79 + 1 ----------------------GAAAGGGAAUUCCUUUUGUUCUUAUUGGAGCACGCGCUGCCAAAUGCCAAUACAAAUGGCGCAAAAAAGGACGCGCCAC ----------------------.((((((....))))))((((((.(((((((....))).))))..((((.......))))......))))))....... ( -22.30) >DroSec_CAF1 51781 90 + 1 GGGCGUGGG--------UGGGUGUGAGGGAAU-CCUUUUGUUCUUAUUGGAGCACGCGCUGCCAAAUGCCAAUACAAAUGGCGCAAAAAAGGACGCGCA-- ..(((((((--------..(((((((((....-))))..(((((....))))))))).)..))....((((.......))))...........))))).-- ( -31.00) >DroYak_CAF1 54133 100 + 1 CGGCGUGGGUGUGUGUGUGUGUGUGAGGGAAU-CCUUUUGUUCUUAUUGGAGCACGCGCUGCCAAAUGCCAAUACAAAUGGCGCAAAAAAGGACGCGCGGC (.((((((((((((((((....(((((((.(.-.....).)))))))....)))))))).)))....((((.......))))...........))))).). ( -33.20) >DroAna_CAF1 51654 95 + 1 GGGCGUUGG------GCAAGGAGUGAGGGAAUUCCUUUUGUUCUUAUUGGAGCACGCGCUGCCAAAUGCCAAUACAAAUGGCGCAAAAAAGGACGCGCCGC .((((((.(------(((((((((......))))))).((((((....))))))......))).)))))).........(((((..........))))).. ( -35.70) >DroPer_CAF1 66726 79 + 1 ----------------------GAAAGGGAAUUCCUUUUGUUCUUAUUGGAGCACGCGCUGCCAAAUGCCAAUACAAAUGGCGCAAAAAAGGACGCGCCAC ----------------------.((((((....))))))((((((.(((((((....))).))))..((((.......))))......))))))....... ( -22.30) >consensus GGGCGUGGG________UGGGUGUGAGGGAAU_CCUUUUGUUCUUAUUGGAGCACGCGCUGCCAAAUGCCAAUACAAAUGGCGCAAAAAAGGACGCGCCGC ..((((..................(((((....))))).((((((.(((((((....))).))))..((((.......))))......))))))))))... (-20.94 = -21.97 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:18 2006