Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,719,565 – 8,719,661 |
Length | 96 |
Max. P | 0.878481 |
Location | 8,719,565 – 8,719,661 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 90.71 |
Mean single sequence MFE | -16.93 |
Consensus MFE | -16.53 |
Energy contribution | -16.53 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.67 |
Structure conservation index | 0.98 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.878481 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8719565 96 + 22407834 UGCAGAGUCGUUGUCCUAUAACCUUUUAGUUUCGCUUUAUUCUGCGCUUCGCCAGCGACUUUAUUUCAUACCUCUUUAUUUAUUAAGGCUUUGUUU .((((((((((((..(((........)))...(((........)))......))))))))))...........(((........)))))....... ( -16.80) >DroSec_CAF1 32194 88 + 1 UGCAGAGUCGUUGUCCUAUAACCUUUUAGUUUCGCUUUAUUCUGCGGUUUGCCAGCGACUUUAUUUCUUACCUCUUUAUUUAUUAAGG-------- ...((((((((((..(((........)))..((((........)))).....))))))))))...........(((((.....)))))-------- ( -17.30) >DroSim_CAF1 32917 88 + 1 UGCAGAGUCGUUGUCCUAUAACCUUUUAGUUUCGCUUUAUUCCGCGGUUUGCCAGCGACUUUAUUCCAUACCUCUUUAUUUAUUAAGG-------- ...((((((((((..(((........)))..((((........)))).....))))))))))...........(((((.....)))))-------- ( -16.70) >consensus UGCAGAGUCGUUGUCCUAUAACCUUUUAGUUUCGCUUUAUUCUGCGGUUUGCCAGCGACUUUAUUUCAUACCUCUUUAUUUAUUAAGG________ ...((((((((((..(((........)))...(((........)))......))))))))))...........(((((.....)))))........ (-16.53 = -16.53 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:14 2006