| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,717,048 – 8,717,144 |
| Length | 96 |
| Max. P | 0.778672 |
| Location | 8,717,048 – 8,717,144 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 80.47 |
| Mean single sequence MFE | -26.77 |
| Consensus MFE | -17.54 |
| Energy contribution | -17.82 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.778672 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8717048 96 + 22407834 -AAUGUAUUCAGCAGAUCAGCAUUUCCGCAAAUGAUAAAUGGACUUUUCCA-A-----ACAA---AUCGCAUGCAACA-U--UUUUGGCCAGGGGCCAAGCUGAAUGAC -....((((((((..............(((..((((...((((....))))-.-----....---))))..)))....-.--..((((((...)))))))))))))).. ( -26.20) >DroPse_CAF1 42852 105 + 1 -AGAGUAUUAAACAGAUCAGCAUUUCCGCAAGUGAUGAAUGAACGUCUCACCAUCACCGCAU---GCCGCAUGCAAUCAUUAUUUUGGCCUGGGGCCAAGCUGAAUGAC -...........((..(((((......(((.((((((..(((.....))).)))))).((..---...)).)))..........((((((...))))))))))).)).. ( -28.30) >DroSec_CAF1 29651 96 + 1 -AAUGUAUUCAGCAGAUCAGCAUUUCCGCAAAUGAUAAAUGGACUUUUCCG-A-----ACAA---AUCGCAUGCAACA-U--UUUUGGCCAGGGGCCAAGCUGAAUGAC -....((((((((..............(((..((((...((((....))))-.-----....---))))..)))....-.--..((((((...)))))))))))))).. ( -25.50) >DroSim_CAF1 30397 96 + 1 -AAUGUAUUCAGCAGAUCAGCAUUUCCGCAAAUGAUAAAUGGACUUUUCCG-A-----ACAA---AUCGCAUGCAACA-U--UUUUGGCCAGGGGCCAAGCUGAAUGAC -....((((((((..............(((..((((...((((....))))-.-----....---))))..)))....-.--..((((((...)))))))))))))).. ( -25.50) >DroAna_CAF1 31145 94 + 1 CCUUGUAUUAAACAGAUCAGCAUUUCCGCAAAUGAUGAAUGAAU------G-A-----ACAGGGCAUCGCCUGCAAUC-A--UUUUGGCCUGGGGCCAAGCGGAAUGAC ..((((.....)))).....((((.((((.......((((((.(------(-.-----...((((...)))).)).))-)--)))(((((...))))).)))))))).. ( -26.80) >DroPer_CAF1 39678 105 + 1 -AGAGUAUUAAACAGAUCAGCAUUUCCGCAAGUGAUGAAUGAACGUCUCACCAUCACCGCAU---GCCGCAUGCAAUCAUUAUUUUGGCCUGGGGCCAAGCUGAAUGAC -...........((..(((((......(((.((((((..(((.....))).)))))).((..---...)).)))..........((((((...))))))))))).)).. ( -28.30) >consensus _AAUGUAUUAAACAGAUCAGCAUUUCCGCAAAUGAUAAAUGAACUUUUCCG_A_____ACAA___AUCGCAUGCAACA_U__UUUUGGCCAGGGGCCAAGCUGAAUGAC ............((..(((((......(((..((((...((..................))....))))..)))..........((((((...))))))))))).)).. (-17.54 = -17.82 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:13 2006