Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,715,987 – 8,716,083 |
Length | 96 |
Max. P | 0.521709 |
Location | 8,715,987 – 8,716,083 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 70.18 |
Mean single sequence MFE | -19.12 |
Consensus MFE | -9.18 |
Energy contribution | -11.30 |
Covariance contribution | 2.12 |
Combinations/Pair | 1.10 |
Mean z-score | -1.77 |
Structure conservation index | 0.48 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521709 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8715987 96 + 22407834 UAUAUUCAGAUGAUAUAUUUCCUG-----AAGGAACUUAAUGGGAAAACAGGCAGUAUAAUGAGUACACA---AAGUAUGCAGUUGCACAAAGUGUUAUCUUAA .......(((((((((.((((((.-----(((...)))...)))))).......(((...((.((((...---..)))).))..))).....)))))))))... ( -17.30) >DroSec_CAF1 28559 95 + 1 UAUAUUCAGAUGAUAUAUUACCUG-----AAGGAACUUAAUGGGC-AACAGGCAGUAUGAAUGGUACACA---GAGUAUGCAGUUGCACAAAGUGUUAUCUAAA .......(((((((((....((..-----..)).......((.((-(((..(((.(((...((.....))---..)))))).))))).))..)))))))))... ( -21.30) >DroSim_CAF1 29268 79 + 1 UAUAUUCAGAUGAUAUAUUUCCUG-----AAGGAAAU-----------------GUACACAGAGUACACA---GAGUAUGCAGUUGCACAAAGUGUUAUCUAAA .......(((((((((((((((..-----..))))))-----------------((((.....))))...---.....(((....)))....)))))))))... ( -18.10) >DroYak_CAF1 28822 88 + 1 UAUAUUCAGAUGAUAUAUUUCCUGUAAUGAAGGAACUUUGUGGGG-GAGAGACUGUAUAAAUAGUACACAAGUACGUAUGCAGAUGUAU--------------- ((((((.....))))))((((((.(.(..(((...)))..)).))-))))..(((((((....((((....)))).)))))))......--------------- ( -19.80) >consensus UAUAUUCAGAUGAUAUAUUUCCUG_____AAGGAACUUAAUGGG__AACAGGCAGUAUAAAGAGUACACA___AAGUAUGCAGUUGCACAAAGUGUUAUCUAAA .......(((((((((..(((((.......)))))...................((((.....))))...........(((....)))....)))))))))... ( -9.18 = -11.30 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:12 2006