Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,712,383 – 8,712,503 |
Length | 120 |
Max. P | 0.500000 |
Location | 8,712,383 – 8,712,503 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.33 |
Mean single sequence MFE | -37.18 |
Consensus MFE | -30.70 |
Energy contribution | -31.32 |
Covariance contribution | 0.61 |
Combinations/Pair | 1.03 |
Mean z-score | -1.79 |
Structure conservation index | 0.83 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8712383 120 - 22407834 UCUGCUGGUGCCAUCGAGGCGGCACACAUAGCGGGUCAAAACUGCAAGCAGCUGGUGUUGGUUUUGCAUCCGUAUAAACCAAAUCAGAAGAUCCUCAAUGAGCCUAUUUCGCAGCAGUGA .(((((((((((........))))).(((.(.(((((....(((....)))(((((.((((((((((....))).))))))))))))..))))).).)))...........))))))... ( -41.80) >DroVir_CAF1 32083 120 - 1 UCUGCUGGUGCCAUCGAGGCGGCACACAUAGCGGGUCAAAACUGCAAGCAGCUGGUGUUGGUUUUGCAUCCGUAUAAACCAAAUCAGAAUAUCCUCAACGAGCCUAUUUCGCAUCAGUAU ..(((((((((.....((((.((.......))((((.....(((....)))(((((.((((((((((....))).))))))))))))...)))).......)))).....))))))))). ( -38.10) >DroGri_CAF1 36476 120 - 1 UCUGCUGGUGCCAUCGAGGCGGCACACAUAGCGGGUCAAAACUGCAAGCAGCUAGUGUUGGUUUUGCAUCCGUAUAAACCAAAUCAGAAUAUCCUCAAUGAGCCUAUUUCACAUCAGUGA .(((((.(((((........))))).....((((.......)))).)))))...(((((((((((((....))).)))))))....(((((..(((...)))..))))))))........ ( -31.30) >DroWil_CAF1 30619 120 - 1 UCUGCUGGUGCCAUCGAGGCGGCACACAUAGCGGGUCAAAACUGCAAGCAGCUAGUGUUGGUUUUGCAUCCGUAUAAACCAAAUCAGAAAAUAUUAAACGAGCCUAUUUCGCAGCAGUAA .(((((((((((........))))).....(((((((((((((...((((.....))))))))))).)))))).........................((((.....))))))))))... ( -33.40) >DroMoj_CAF1 35536 120 - 1 UCUGCUGGUGCCAUCGAGGCGGCACACAUCGCGGGUCAAAACUGCAAGCAGCUGGUGUUGGUUUUGCAUCCCUAUAAACCAAAUCAGAAUAUCCUGCACGAGCCUAUUUCGCAUCAGUAU ..(((((((((.....((((..........((((.......))))..(((((((((.(((((((...........))))))))))))......))))....)))).....))))))))). ( -39.50) >DroPer_CAF1 34453 120 - 1 UCUGCUGGUGCCAUCGAGGCGGCACACAUAGCGGGUCAAAACUGCAAGCAGCUGGUGUUGGUUUUGCAUCCGUAUAAACCAAAUCAGAAGAUACUGAACGAGCCUAUUUCACAGCAGUAC .(((((((((((........))))).....((((.......)))).....(((.((.((((((((((....))).))))))).((((......)))))).)))........))))))... ( -39.00) >consensus UCUGCUGGUGCCAUCGAGGCGGCACACAUAGCGGGUCAAAACUGCAAGCAGCUGGUGUUGGUUUUGCAUCCGUAUAAACCAAAUCAGAAUAUCCUCAACGAGCCUAUUUCGCAGCAGUAA ..(((((.(((.....((((..........((((.......))))......(((((.((((((((((....))).))))))))))))..............)))).....))).))))). (-30.70 = -31.32 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:08 2006