Locus 3047

Sequence ID 2L_DroMel_CAF1
Location 8,698,532 – 8,698,641
Length 109
Max. P 0.915878
window4851

overview

Window 1

Location 8,698,532 – 8,698,641
Length 109
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 87.89
Mean single sequence MFE -29.38
Consensus MFE -20.66
Energy contribution -22.50
Covariance contribution 1.84
Combinations/Pair 1.04
Mean z-score -2.73
Structure conservation index 0.70
SVM decision value 1.10
SVM RNA-class probability 0.915878
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8698532 109 - 22407834
AUACUUUAUAGAUUACGCAGAUUACGGCGAUUAGAAGUAAUCUCAAACCAAUGGGGGUAAUGGGCCUUGUUGGUGG-UUAAUUAAAAAUGCGUAGUUUUGGCGAUAAUCG
..........((((((((.((((((((.(((((....))))).)..(((((..(((.(....).)))..)))))..-.............)))))))...))).))))). ( -30.50)
>DroSec_CAF1 11144 105 - 1
AUACUUUAUAGAUUGCGCAGAUUGUUGCGAUUAGGAGUAAUCUUAAACCAAUGG-GGUAA--GGCCUUGUUGGUGG-UUAAUUAAAAAUGCGUAGUU-UGGCGAUAAUCU
........(((((((((((....(((((..((((((....))))))(((((..(-((...--..)))..))))).)-.))))......)))))))))-)).......... ( -31.30)
>DroSim_CAF1 11905 107 - 1
AUACUUUAUAGAUUGCGCAGAUUAUUGCGAUUAGGAGUAAUCUUAAACCAAUGGGGGUAA--GGCCUUGUUGGUGG-UUAAUUAAAAAUGCGUAGUUUUGGCGAUAAUCU
.........(((((((((.....((((((.((((((....))))))(((((..(((....--..)))..)))))..-.............))))))....))).)))))) ( -32.30)
>DroEre_CAF1 11797 107 - 1
AUACUUUAUAGAUAACGCAGAUUAUUGCGAUUAGGAGUAAUCGUAAACCAAUGGGGGUAA--GGCCUUGUUGGUGG-UUAAUUAAAAGUGCGAAUUUUUGGCGAUAAUCU
..................((((((((((..(((.((....)).)))(((((..(((....--..)))..)))))..-.....(((((((....))))))))))))))))) ( -29.60)
>DroYak_CAF1 11321 101 - 1
AUACUUUAUAGAUUAAGCAG-------UGAUUAGGAGUAAUCUUAAACCAAUGGGGGUAA--GGCCUUGUUAGUGGGGUAAUUAGAAAUGCCUAGUUUUUGCAAUAAGCU
................((((-------.(((((((......((((..((....))..)))--)(((((......)))))...........))))))).))))........ ( -23.20)
>consensus
AUACUUUAUAGAUUACGCAGAUUAUUGCGAUUAGGAGUAAUCUUAAACCAAUGGGGGUAA__GGCCUUGUUGGUGG_UUAAUUAAAAAUGCGUAGUUUUGGCGAUAAUCU
.........((((((((((...........((((((....))))))(((((..(((........)))..)))))..............))))))))))............ (-20.66 = -22.50 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:03 2006