Locus 3043

Sequence ID 2L_DroMel_CAF1
Location 8,683,223 – 8,683,319
Length 96
Max. P 0.519502
window4843

overview

Window 3

Location 8,683,223 – 8,683,319
Length 96
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 82.15
Mean single sequence MFE -38.97
Consensus MFE -23.21
Energy contribution -24.60
Covariance contribution 1.39
Combinations/Pair 1.05
Mean z-score -1.93
Structure conservation index 0.60
SVM decision value -0.03
SVM RNA-class probability 0.519502
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8683223 96 + 22407834
UCAGAUCCUGAAUGGAUGGACAGCCGGCGUGUGGUCGAUGGGCGGGAAGGACGCCCUUCCAGGAAGGUGCGGGCUCAGCUGGCUGUAAAUGAAACA
(((.((((.....))))..(((((((((.((.(.(((..(((((.......)))))..((.....))..))).).)))))))))))...))).... ( -37.50)
>DroPse_CAF1 2944 94 + 1
GCAGAUCCUGUAUGGAAGGGCAUCCGGGGUGAUGGCGAUGGGCGGGAAGAACGCCCCGCCAGGAAGAAGCCGGUUCCGCUGCCUAAAGCCA--AUG
((...(((.....))).(((((..(((..(..(((((..(((((.......))))))))))((......)).)..))).)))))...))..--... ( -36.70)
>DroSec_CAF1 1827 96 + 1
UAAGAUCCUGAAUGGAUGGACAGCCGGCGUGGGGUCGAUGGGCGGGAAGGACGCCCUUCCAGGAAGGUGCGGGCUCAGCUGGCUGUAAAUAAAACA
....((((.....))))..(((((((((.((((.(((..(((((.......)))))..((.....))..))).))))))))))))).......... ( -40.00)
>DroEre_CAF1 3035 94 + 1
UCAGAUCCUGAAUGGAUGGACAGCCGGCGUGGGGUCGAUGGGCGGGAAGAACGCCCUUCCAGGACGGUGCCGGCUCAGCUGGCUGUAGACG--AGA
((..((((.....))))..(((((((((...(((((((.(((((.......))))).))..((......))))))).)))))))))....)--).. ( -41.40)
>DroYak_CAF1 1848 96 + 1
UCAGAUCCUGAAUGGAUGGACAGCCGGCGUGGGGUCGAUGGGCGGGAAGGACGCCCUUCCAAGAUGGUGCCGGCUCAGCUGGCUGUAGAUGCAACA
((((...)))).((.((..(((((((((...((((((..(((((.......)))))..((.....))...)))))).)))))))))..)).))... ( -41.50)
>DroPer_CAF1 1800 94 + 1
GCAGAUCCUGUAUGGAAGGGCAUCCGGGGUGAUGGCGAUGGGCGGGAAGAACGCCCCGCCAGGAAGAAGCCGGUUCCGCUGCCUAAAGCCA--AUG
((...(((.....))).(((((..(((..(..(((((..(((((.......))))))))))((......)).)..))).)))))...))..--... ( -36.70)
>consensus
UCAGAUCCUGAAUGGAUGGACAGCCGGCGUGGGGUCGAUGGGCGGGAAGAACGCCCUUCCAGGAAGGUGCCGGCUCAGCUGGCUGUAGACA__ACA
((((((((.....))))....(((((((........((.(((((.......))))).)).........)))))))...)))).............. (-23.21 = -24.60 +   1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:55 2006