Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,673,440 – 8,673,559 |
Length | 119 |
Max. P | 0.763374 |
Location | 8,673,440 – 8,673,559 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 69.22 |
Mean single sequence MFE | -48.27 |
Consensus MFE | -17.42 |
Energy contribution | -19.57 |
Covariance contribution | 2.14 |
Combinations/Pair | 1.41 |
Mean z-score | -1.93 |
Structure conservation index | 0.36 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.763374 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8673440 119 + 22407834 CAAUCGCCCAGUGAACGCUUUCUUGGGUAUACGGUAUGGCACGGUUGGAGGUGGCUUGGCGCGCUUCCAGGCGGCUCAACCGAUUGGAUAC-CAGGGACGAGUUAAUGCCACCGUCCAGA (((((((((((.(((....)))))))))....(((..(((.((.(((((((((((...)).))))))))).)))))..)))))))).....-...(((((.((.......)))))))... ( -46.60) >DroGri_CAF1 236 119 + 1 GGGUCGACCCAUCGAUGCUUAUUUGGGCAUACGUUAUGCUCAAGUGAACAGUGGCUUGGGACGCUUCCAGAAGGCCAGAGCUGUUCCUUAUGCAGG-UCGCAUCGAUGCCACCCAGAUGA ((((.(...((((((((((((((((((((((...)))))))))))))....((((((.(((....)))...))))))((.((((.......)))).-)))))))))))).))))...... ( -50.70) >DroEre_CAF1 248 119 + 1 CAAUCGCCCGGUGAAUGCCUUCUUGGGUAUACGCUAUGGCACGGUUGGAGGCGGCUUGGCACGCUUCCAGGCAGCCCAACCAAUUGGAUAC-CAGGGACGGGUUAAUGCCAGCGCGCGGA ...((((.(((((.((((((....)))))).)))..(((((.(.(((((((((((...)).))))))))).)(((((..((...(((...)-)).))..)))))..))))).)).)))). ( -50.50) >DroWil_CAF1 2111 119 + 1 CAAUCGUCCCAUAGAUGCUUAUCUGGGCAUCCGCUAUGCUCAGGUCGGCAGCGGACUCGGUCGCUUCCAACAGGCCAGAUCUGUGCCGUAU-CAGGGUCAAGUGAAUGCCACAAAGGCAA .....(.(((...(((((..((((((((((.....)))))))))).((((.((((((.((((..........)))))).))))))))))))-).))).).......((((.....)))). ( -44.20) >DroYak_CAF1 263 119 + 1 CAAUCGCCCGGUGAAUGCCUUCUUGGGCAUACGGUAUGGCACGGUUGGAGGCGGCUUGGCACGCUUCCAGGCGGCCCAACCGAUUGGAUAC-CAGGGACGGGUUAACGCCACCGUCCAGA (((((((((((.(((....)))))))))....(((..(((.((.(((((((((((...)).))))))))).)))))..)))))))).....-...((((((..........))))))... ( -55.10) >DroAna_CAF1 295 119 + 1 CAAUGGCCUGAUUAACGCUUUCCUUGGCAUCCGUUACGGCAAGGUGGGCAGUGGCUUGUCGCGCUUCCAGGCCGCCCAGCCCACUGGCUAC-CAGGGCAGAGUCAAUGCCAACGUUAAGA ...((((.(((((...(((((((.((((....)))).))...(((((.((((((((.(.((.(((....))))).).)).)))))).))))-))))))..)))))..))))......... ( -42.50) >consensus CAAUCGCCCGAUGAAUGCUUUCUUGGGCAUACGCUAUGGCAAGGUUGGAAGCGGCUUGGCACGCUUCCAGGCGGCCCAACCGAUUGGAUAC_CAGGGACGAGUUAAUGCCACCGUGCAGA ...((((((.....((((((....))))))...........(((((((..((.((((((.......)))))).)))))))))............))).)))................... (-17.42 = -19.57 + 2.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:51 2006