Locus 3040

Sequence ID 2L_DroMel_CAF1
Location 8,667,219 – 8,667,332
Length 113
Max. P 0.986332
window4837

overview

Window 7

Location 8,667,219 – 8,667,332
Length 113
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 95.59
Mean single sequence MFE -20.06
Consensus MFE -17.41
Energy contribution -17.61
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.99
Structure conservation index 0.87
SVM decision value 2.04
SVM RNA-class probability 0.986332
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8667219 113 + 22407834
ACAUACUCCCCGAUCUGCUAAGUAUACACAAGCAAGCAUAACAUAACAUACGUAUAUAUGACUCUAUA--UAUACCAAUAGAUUUCAUAGACGAUUCACAUGGAUCGGCUACGCU
.........((((((((((..((........)).))).............(((...(((((.(((((.--.......)))))..))))).)))........)))))))....... ( -20.90)
>DroSec_CAF1 36225 113 + 1
ACAUACUCCCCGAUCUGCUAAGUAUACACAAGCAAGCAUAACAUAACAUACGUAUAUAUGACUCUAUA--UAUACCAAUAGAUUUCAUAGACGAUUCACAUGGAUCGGCUACGCU
.........((((((((((..((........)).))).............(((...(((((.(((((.--.......)))))..))))).)))........)))))))....... ( -20.90)
>DroSim_CAF1 36359 113 + 1
ACAUACUCCCCGAUCUGCUAAGUAUACACAAGCAAGCAUAACAUAACAUACGUAUAUAUGACUCUAUA--UAUACCAAUAGAUUUCAUAGACGAUUCACAUGGAUCGGCUACGCU
.........((((((((((..((........)).))).............(((...(((((.(((((.--.......)))))..))))).)))........)))))))....... ( -20.90)
>DroEre_CAF1 38346 109 + 1
ACAUACUCCCCGAUCUGCUAAGUAUACACAA----GCAUAACAUAACAUACGUAUAUAUGACUCUAUA--UAUACCAAUAGAUUUCAAAGACGGUUCACAAGGAUCGGCUGCGCU
.........((((((((((...........)----))..............(((((((((....))))--)))))..........................)))))))....... ( -17.80)
>DroYak_CAF1 37815 111 + 1
ACAUACUCCCCGAUCUGCUAAGUAUACACAA----GCAUAACAUAACAUACGUAUAUAUGACUCUAUAUAUAUACCAAUAGAUUUCAUAGACGAUUCACAAGGAUCGGCUACGCU
.........((((((((((...........)----)).............(((...(((((.(((((..........)))))..))))).)))........)))))))....... ( -19.80)
>consensus
ACAUACUCCCCGAUCUGCUAAGUAUACACAAGCAAGCAUAACAUAACAUACGUAUAUAUGACUCUAUA__UAUACCAAUAGAUUUCAUAGACGAUUCACAUGGAUCGGCUACGCU
.........(((((((((.................)).............(((...(((((.(((((..........)))))..))))).)))........)))))))....... (-17.41 = -17.61 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:50 2006