Locus 3039

Sequence ID 2L_DroMel_CAF1
Location 8,664,112 – 8,664,229
Length 117
Max. P 0.861478
window4836

overview

Window 6

Location 8,664,112 – 8,664,229
Length 117
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 93.18
Mean single sequence MFE -26.65
Consensus MFE -23.85
Energy contribution -24.05
Covariance contribution 0.20
Combinations/Pair 1.04
Mean z-score -1.51
Structure conservation index 0.90
SVM decision value 0.83
SVM RNA-class probability 0.861478
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8664112 117 + 22407834
UCUAUCUCUAUCUUUUC--UCUAUUCUUCUUCCCCUUUUUACAUUAGGUUUACCUUUGAGACGGGAGUGGGGCGGCUGAAACCAGUCAGGGACUAAUUACCCAAAAUAUGGUAAAUACU-
....(((((........--.....(((..(((((.((((......(((....)))..)))).)))))..))).(((((....))))))))))....(((((........))))).....- ( -26.10)
>DroVir_CAF1 57503 109 + 1
UCUA--UCUAUCUUUUC------UUCUUCUUCCC-UU-UUUCAUUAGGUUUACCUUUGAGACGGGAGUGGGGCGGCUGAAACCAGUCAGGGACUAAUUACCCAAAAUAUGGUAAAUACU-
..((--(.((((.....------.(((..(((((-..-(((((..(((....))).))))).)))))..))).(((((....))))).(((........))).......)))).)))..- ( -26.40)
>DroGri_CAF1 115531 110 + 1
UCUA--UCUAUCUUUUC------UUCUUCUUCCC-UUUUUUCAUUAGGUUUACCUUUGAGACGGGAGUGGGGCGGCUGAAACCAGUCAGGGACUAAUUACCCAAAAUAUGGUAAAUACC-
..((--(.((((.....------.(((..(((((-...(((((..(((....))).))))).)))))..))).(((((....))))).(((........))).......)))).)))..- ( -26.00)
>DroWil_CAF1 92632 117 + 1
UCUCUAUCUAUCUUUUC--UCUCUUCUUCUUCCC-UUUUUUCAUUAGGUUUACCUUUGAGACGGGAGUGGGGCGGCUGAAACCAGUCAGGGACUAAUUACCCAAAAUAUGGUAAAUACUU
(((((............--.....(((..(((((-...(((((..(((....))).))))).)))))..))).(((((....))))))))))....(((((........)))))...... ( -28.30)
>DroMoj_CAF1 56730 109 + 1
UCUA--UCUAUCUUUUC------UUCUUCUUCCC-UU-UUUCAUUAGGUUUACCUUUGAGACGGGAGUGGGGCGGCUGAAACCAGUCAGGGACUAAUUACCCAAAAUAUGGUAAAUACU-
..((--(.((((.....------.(((..(((((-..-(((((..(((....))).))))).)))))..))).(((((....))))).(((........))).......)))).)))..- ( -26.40)
>DroAna_CAF1 34483 118 + 1
UCUAUCUCUAUCUUAUCUCUCUCUUCUUCUUCCCAUUUUU-UAUUAGGUUUACCUUUGAGACGGGAGUGGGGCGGCUGAAACCAGUCAGGGACUAAUUACCCAAAAUAUGGUAAAUACU-
....(((((...............(((..(((((.((((.-....(((....)))..)))).)))))..))).(((((....))))))))))....(((((........))))).....- ( -26.70)
>consensus
UCUA__UCUAUCUUUUC______UUCUUCUUCCC_UUUUUUCAUUAGGUUUACCUUUGAGACGGGAGUGGGGCGGCUGAAACCAGUCAGGGACUAAUUACCCAAAAUAUGGUAAAUACU_
........((((............(((..(((((....(((((..(((....))).))))).)))))..))).(((((....))))).(((........))).......))))....... (-23.85 = -24.05 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:49 2006