Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,650,217 – 8,650,316 |
Length | 99 |
Max. P | 0.750646 |
Location | 8,650,217 – 8,650,316 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 78.68 |
Mean single sequence MFE | -19.79 |
Consensus MFE | -14.40 |
Energy contribution | -14.36 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.07 |
Mean z-score | -1.58 |
Structure conservation index | 0.73 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.750646 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8650217 99 + 22407834 GCCAU-------UUUACAAUAGAAACGCACUGAAGUGCUGC----UCUCAGUGAAAAGAUGCCACACCAACCAAGCUUAUGCUUGGAAACAUUUUCC-CCAAACUACUUCU ....(-------(((((...(((...((((....))))...----)))..))))))..............((((((....))))))...........-............. ( -19.30) >DroSec_CAF1 19173 103 + 1 GCCAU-------UUUACAAUAGAAACGCACUGAAGUGCUCUCGAAAAUCAGUGAAAAGAUGCCAUACCAACCAAGCUUAUGCUUGGAAAGAUUUUCC-CCAGACCACAUCU ((..(-------(((......)))).))...((.(((.(((.(((((((.(((.........))).....((((((....))))))...))))))).-..))).))).)). ( -21.90) >DroSim_CAF1 19218 102 + 1 CCCAU-------CUUAAAAUAGAAACGCACUGAAGUGCUCU--AAAAUCAGUGAAAAGAUGCCAUACCAACCAAGCUUAUGUUUGGAAACAUUUUCCCCCAGACCACAACU ..(((-------(((............((((((..(.....--.)..))))))..)))))).........((((((....))))))......................... ( -16.64) >DroEre_CAF1 21309 94 + 1 GACUU-------UUCACAAUGGAAACGCACUGAAGUGCUCUCGAAAAUCAAUGCAAAGAUGCCCCACCAACCAAGCUUAUGCUUGGACACAUUUCCA-GCAA--------- ((.((-------(((.....(....)((((....))))....)))))))..(((...(......).....((((((....))))))...........-))).--------- ( -21.90) >DroYak_CAF1 19664 110 + 1 GCCAUUUUCAUUUGCACAAUAGAAACGCACUGAAGUGCCCUCGAAAAUCAAUGACAAGAAGCCACAGCAGCCAAGCUUAUGUUUGGAAACAUUUUCU-UCAGACCACUUCU ((...((((............)))).))...((((((..((.(((....((((.......((....))..((((((....))))))...))))...)-))))..)))))). ( -19.20) >consensus GCCAU_______UUUACAAUAGAAACGCACUGAAGUGCUCUCGAAAAUCAGUGAAAAGAUGCCACACCAACCAAGCUUAUGCUUGGAAACAUUUUCC_CCAGACCACAUCU .....................((((.((((....))))................................((((((....))))))......))))............... (-14.40 = -14.36 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:47 2006