Locus 3037

Sequence ID 2L_DroMel_CAF1
Location 8,646,594 – 8,646,685
Length 91
Max. P 0.985115
window4833 window4834

overview

Window 3

Location 8,646,594 – 8,646,685
Length 91
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 81.09
Mean single sequence MFE -28.33
Consensus MFE -18.32
Energy contribution -18.10
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -3.02
Structure conservation index 0.65
SVM decision value 2.00
SVM RNA-class probability 0.985115
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8646594 91 + 22407834
CGGAUGCAGCUGCCUUCCCCGUGAGUGUGUGUUGCUAUACGUGUGUGUGCUUCUUCCUUCCACA------CACACACACACUCACGAGUGUGUUGGC
.(((.((....))..))).(((((((((((((......))(((((((((...........))))------))))))))))))))))........... ( -36.20)
>DroSec_CAF1 15279 81 + 1
CGGAUGCAGCUGCCUUCCCCAUGUG----------------UGUGUGUGCUUCUUCCUUCCACACUUACUCACACACACACUCACGAGUGUGUUGGC
.(((.((....))..)))(((.(((----------------((.(((((...........))))).....)))))(((((((....)))))))))). ( -24.90)
>DroSim_CAF1 15836 81 + 1
CGGAUGCAGCUGCCUUCCCCAUGUG----------------UGUGUGUGCUUCUUCCCUCCACACUUACUCACACACACACUCACAAGUGUGUUGGC
.(((.((....))..)))(((.(((----------------((.(((((...........))))).....)))))(((((((....)))))))))). ( -23.90)
>consensus
CGGAUGCAGCUGCCUUCCCCAUGUG________________UGUGUGUGCUUCUUCCUUCCACACUUACUCACACACACACUCACGAGUGUGUUGGC
.(((.((....))..)))(((.....................(((((((.....................)))))))(((((....)))))..))). (-18.32 = -18.10 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 4

Location 8,646,594 – 8,646,685
Length 91
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 81.09
Mean single sequence MFE -31.56
Consensus MFE -20.34
Energy contribution -20.45
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -3.01
Structure conservation index 0.64
SVM decision value 1.96
SVM RNA-class probability 0.984134
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8646594 91 - 22407834
GCCAACACACUCGUGAGUGUGUGUGUG------UGUGGAAGGAAGAAGCACACACACGUAUAGCAACACACACUCACGGGGAAGGCAGCUGCAUCCG
(((......((((((((((((((((((------((((.............)))))))(.....).)))))))))))))))...)))........... ( -40.22)
>DroSec_CAF1 15279 81 - 1
GCCAACACACUCGUGAGUGUGUGUGUGAGUAAGUGUGGAAGGAAGAAGCACACACA----------------CACAUGGGGAAGGCAGCUGCAUCCG
.(((.(((....))).(((((((((((..(...(.(....).)..)..))))))))----------------))).)))(((..((....)).))). ( -27.30)
>DroSim_CAF1 15836 81 - 1
GCCAACACACUUGUGAGUGUGUGUGUGAGUAAGUGUGGAGGGAAGAAGCACACACA----------------CACAUGGGGAAGGCAGCUGCAUCCG
.(((.(((....))).(((((((((((..(...............)..))))))))----------------))).)))(((..((....)).))). ( -27.16)
>consensus
GCCAACACACUCGUGAGUGUGUGUGUGAGUAAGUGUGGAAGGAAGAAGCACACACA________________CACAUGGGGAAGGCAGCUGCAUCCG
.((.((((((.(....).))))))........(((((.............)))))......................))(((..((....)).))). (-20.34 = -20.45 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:47 2006