Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,640,925 – 8,641,020 |
Length | 95 |
Max. P | 0.548708 |
Location | 8,640,925 – 8,641,020 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 79.25 |
Mean single sequence MFE | -18.08 |
Consensus MFE | -10.26 |
Energy contribution | -10.48 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.15 |
Mean z-score | -1.69 |
Structure conservation index | 0.57 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548708 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8640925 95 - 22407834 AACAGCCAAAGUUGAAAUCGAAAUGGAAAUAGGAAUGGAAAUGGGAAUUGCAAGGCCAUU-AGGCCAAAGUGCUGGAAAGUUAACAAACAGAUCGA-- ..((((....))))...((((..((............................((((...-.))))...(((((....)))..))...))..))))-- ( -17.00) >DroPse_CAF1 19264 92 - 1 AACAGCAAAAGUUGAAAUCGAAAUGGAAAUGCGAAUGGA------AAUUGCAAGGCCAUCCAGGCCAAAGUGCUAAAAAGUUUAUAAAGACAUCCACA ..((((....)))).........((((..(((.(((...------.)))))).((((.....)))).............((((....)))).)))).. ( -18.80) >DroEre_CAF1 12322 95 - 1 AACAGCCAAAGUUGAAAUCGAAAUGGAAAUAGGAAUGGAAAUGGAAAUUGCAAGGCCAUU-UGGCCAAAGUACUGCCAAGUUAACGAACAGCACGG-- ..........((((...(((..((....))...........(((....(((..((((...-.))))...)))...)))......))).))))....-- ( -15.50) >DroYak_CAF1 10365 95 - 1 AACAGCCAAAGUUGAAAUCGAAAUGGAAAUAGGAAUGGAAAUGGAAAUUGCAAGGCCAUU-UGGCCAAAGUGCUGCAAAGUUAACGAACAGCACGA-- .....(((...(((....)))..))).........((..(((....))).)).((((...-.))))...((((((....(....)...))))))..-- ( -20.30) >DroAna_CAF1 8965 83 - 1 CAGAGCCA-AGUUGAAAUCAGAAUGGAAAUGGGAAUGGAAAUGGAAAUGGCAAGGCCAUC-GGGCCAAAGUGCUAAAAAGUUGUU------------- ((...(((-..(((....)))..)))...))................(((((.((((...-.))))....)))))..........------------- ( -18.10) >DroPer_CAF1 19407 92 - 1 AACAGCAAAAGUUGAAAUCGAAAUGGAAAUGCGAAUGGA------AAUUGCAAGGCCAUCCAGGCCAAAGUGCUAAAAAGUUUAUAAAGACAUCCACA ..((((....)))).........((((..(((.(((...------.)))))).((((.....)))).............((((....)))).)))).. ( -18.80) >consensus AACAGCCAAAGUUGAAAUCGAAAUGGAAAUAGGAAUGGAAAUGGAAAUUGCAAGGCCAUC_AGGCCAAAGUGCUAAAAAGUUAACAAACAGAUCGA__ .....(((...(((....)))..))).......................(((.((((.....))))....)))......................... (-10.26 = -10.48 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:44 2006