Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,638,608 – 8,638,702 |
Length | 94 |
Max. P | 0.570770 |
Location | 8,638,608 – 8,638,702 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 81.02 |
Mean single sequence MFE | -21.59 |
Consensus MFE | -13.61 |
Energy contribution | -14.17 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.06 |
Mean z-score | -1.60 |
Structure conservation index | 0.63 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570770 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8638608 94 - 22407834 CACUUUAGCGCAUUGCUUAACACACAUAGGAGCACACUAACACACA------------CAUUAUUGCAGAGUGCAACAAGCAAUGCAAGCGCUUGUGAAAAUGUCG (((...(((((..(((((...........)))))............------------.....(((((...(((.....))).)))))))))).)))......... ( -23.70) >DroPse_CAF1 16969 94 - 1 CACUUUAACGCAAUGCUUAACACACAUAGGCGCACACAGAC------------ACACAGACUAACGCAAUGUGCAACAACCAAUGCAACGUUUUGUGAAAAUGUCG .........((...(((((.......))))))).....(((------------(((((((...(((.....((((........)))).)))))))))....)))). ( -15.90) >DroSec_CAF1 7423 102 - 1 CACUUUAGCGCAUUGCUUAACACACAUAGGAGCACACUAACACACACAC----ACGCACAUUUUUGCAGAGUGCAACAAGCAAUGCAAGCGCUUGUGAAAAUGUCG (((...(((((..(((((...........)))))...............----..........(((((...(((.....))).)))))))))).)))......... ( -23.60) >DroSim_CAF1 7538 106 - 1 CACUUUAGCGCAUUGCUUAACACACAUAGGAGCACACUAACACACACACACAUACGCACAUUAUUGCAGAGUGCAACAAGCAAUGCAAGCGCUUGUGAAAAUGUCG (((...(((((..(((((...........))))).............................(((((...(((.....))).)))))))))).)))......... ( -23.70) >DroEre_CAF1 10074 88 - 1 CACUGUAGCGCAUUGCUUAACACACAUAGGAA------CACACACA------------CACUAGCGCAGAGUGCAACAAGCAAUGCAAGCGCUUGUGAAAAUGUCG (((....(((((((((((........(((...------........------------..)))((((...))))...)))))))))..))....)))......... ( -20.52) >DroYak_CAF1 8016 94 - 1 CACUUUAGAGCAUUGCUUAACACACAUAGGCUCACAUGCACACACA------------CACAGCUGCAGAGUGCAACAAGCAAUGCAAGCGCUUGUGAAAAUGUCG .......((((((.(((((.......)))))....)))).....((------------((..((((((...(((.....))).))).)))...))))......)). ( -22.10) >consensus CACUUUAGCGCAUUGCUUAACACACAUAGGAGCACACUAACACACA____________CACUAUUGCAGAGUGCAACAAGCAAUGCAAGCGCUUGUGAAAAUGUCG (((...(((((....((((.......))))...................................(((...(((.....))).)))..))))).)))......... (-13.61 = -14.17 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:43 2006