Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,626,795 – 8,626,892 |
Length | 97 |
Max. P | 0.983218 |
Location | 8,626,795 – 8,626,892 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 72.74 |
Mean single sequence MFE | -14.06 |
Consensus MFE | -3.42 |
Energy contribution | -4.22 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.12 |
Mean z-score | -2.27 |
Structure conservation index | 0.24 |
SVM decision value | 1.94 |
SVM RNA-class probability | 0.983218 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8626795 97 - 22407834 CAUACAU-CUC--ACGUUACCAAUUAAUUGAUUUCACAGCAGUCAACUCAAUUAGCUAAACAAAAUAAUUCAAAAUUGUCUUGUUUGAUGUAACAGCAAA ..(((((-(..--..........((((((((.((.((....)).)).))))))))..((((((.(((((.....))))).))))))))))))........ ( -16.30) >DroSec_CAF1 55014 84 - 1 CACACAU-CUC--ACGUUACCAAUUAAUUGAGUUCACAGCAGUCAACUCAAUU-------------AAUUCAAAAUUGUCUUGUUUUAUGUAACAGCAAC .......-...--..(((((.(((((((((((((.((....)).)))))))))-------------)))).(((((......)))))..)))))...... ( -17.90) >DroSim_CAF1 61339 97 - 1 CACACAU-CUC--ACGUUACCAAUUAAUUGAUUUCACAGCAGUCAACUCAAUUAGCUAUCCAAAAUAAUUCAAAAUUGUCUUGUUUUAUGUAACAGCAAA .......-...--..(((((...((((((((.((.((....)).)).))))))))......(((((((..((....))..)))))))..)))))...... ( -12.50) >DroEre_CAF1 56174 100 - 1 CAACCAUCAUCAUGAUUGAUCAAAUGAUUGAUUUCACAGCAGUCCUCCCAAUUAGCUAUCUAAAAUAAUUCAAAAUAACCUUGUUUUAUUUAACAGUCAA ............((((((.......(((((.........)))))..................((((((..(((.......)))..))))))..)))))). ( -11.60) >DroYak_CAF1 57833 73 - 1 CAUACAU-AUC--GGGUUACCAAUUGAUUGAUUUCCUAGUAGUCACCUCAAUUAGC------------------------UUGUUUUAGGUAACAGCCAA .......-...--((((((((((((((.(((((.......)))))..))))))...------------------------........))))))..)).. ( -12.00) >consensus CACACAU_CUC__ACGUUACCAAUUAAUUGAUUUCACAGCAGUCAACUCAAUUAGCUA___AAAAUAAUUCAAAAUUGUCUUGUUUUAUGUAACAGCAAA ........................(((((((.((.((....)).)).)))))))..........................(((((......))))).... ( -3.42 = -4.22 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:32 2006