Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,625,036 – 8,625,139 |
Length | 103 |
Max. P | 0.757975 |
Location | 8,625,036 – 8,625,139 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 65.44 |
Mean single sequence MFE | -14.46 |
Consensus MFE | -7.29 |
Energy contribution | -6.98 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.29 |
Mean z-score | -1.58 |
Structure conservation index | 0.50 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.757975 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8625036 103 + 22407834 --CUUAAUAUU-----UA--UAUUAUUAUAGUCAGUUAAUAUUAUUUUUUAGCUAUUACUCACAA-----CCUAGCUACUUUUGCUAUACCGGCAAUACCAACACUACCUCAGUGUC --..(((((..-----..--...)))))..(((((((((.........))))))...........-----..((((.......))))....))).......(((((.....))))). ( -12.30) >DroSec_CAF1 53348 110 + 1 --CUUAAUAAUGUUUUUAUUUAUUAUUAUAGUAAGCAAAUAUUAUUUUUUAGCUAUUAUUUACAA-----CCUAGCUACUUUUGCUACACCGACAAUACCAACACUGUCACUGUGUC --...(((((((........)))))))(((((.((((((..........((((((..........-----..))))))..)))))).....((((..........)))))))))... ( -15.20) >DroEre_CAF1 54471 94 + 1 --CUCAAUAAU---------------UCAAGUAUGUUUAUACUACUUUGUAGCA-UUUUUUCCAAGCUACUUUAGCUACUUUUGCUAUAACUG-----GCAACACUGUCACUGUGUC --.........---------------...(((((....)))))...((((((((-.........(((((...))))).....)))))))).((-----(((....)))))....... ( -14.54) >DroYak_CAF1 56248 90 + 1 CCGUGAAUAAU---------------U------AGUUGAUAAUAUACUUUAGCU-UUUUUUACAA-----CUCAGCUACUUUUGCUGUAGCAGAUAUACCAACACUGACACUGUGUC ..(((((....---------------.------((((((.........))))))-...)))))..-----....(((((.......)))))..........((((.......)))). ( -15.80) >consensus __CUUAAUAAU_______________UAUAGUAAGUUAAUAUUAUUUUUUAGCU_UUAUUUACAA_____CCUAGCUACUUUUGCUAUACCGGCAAUACCAACACUGUCACUGUGUC .................................((((((.........))))))..................((((.......))))..............((((.......)))). ( -7.29 = -6.98 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:31 2006