Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,622,625 – 8,622,734 |
Length | 109 |
Max. P | 0.899336 |
Location | 8,622,625 – 8,622,734 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 90.24 |
Mean single sequence MFE | -30.11 |
Consensus MFE | -26.25 |
Energy contribution | -26.36 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.11 |
Mean z-score | -1.94 |
Structure conservation index | 0.87 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.899336 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8622625 109 + 22407834 -------GAACCACCCAUUCGGCACUUAAGACUUUCAGCUUCAUCGGCUUUCCGUUUAAAUAAAUAAAACGCUGCGGAAGAAGUUUAUCCCGACAAAGUGCUGAGCGGUCGGAAAA -------...((..((.((((((((((.........((((((.((.((....(((((.........)))))..)).)).))))))..........)))))))))).))..)).... ( -31.51) >DroSec_CAF1 50832 109 + 1 -------GAACCAACCAUUCGGCACUUAAGACUUUCAGCUUCAUCGGCUUUCCGUUUAAAUAAAUAAAACGCUGCGGAAGAAGUUUAUCCCGACAAAGUGCUGAGCGGGCUAAAAA -------.......((.((((((((((.........((((((.((.((....(((((.........)))))..)).)).))))))..........)))))))))).))........ ( -28.91) >DroSim_CAF1 56500 109 + 1 -------GAACCAACCAUUCGGCACUUAAGACUUUCAGCUUCAUCGGCUUUCCGUUUAAAUAAAUAAAACGCUGCGGAAGAAGUUUAUCCCGACAAAGUGCUGAGCGGGCUGAAAA -------....((.((.((((((((((.........((((((.((.((....(((((.........)))))..)).)).))))))..........)))))))))).))..)).... ( -29.21) >DroEre_CAF1 52315 109 + 1 -------GAACCACCCAUUCGGCACUUAAGACAUUCAGCUUCAUCGGCUUUCCGUUUAAAUAAAUAAAACGCUGCGGAAGAAGUUUAUCCCGACAAAGUGCUGAGCGGGCUGAAAA -------....(((((.((((((((((.........((((((.((.((....(((((.........)))))..)).)).))))))..........)))))))))).))).)).... ( -32.31) >DroYak_CAF1 53764 109 + 1 -------GAACCAUCCAUUCGGCACUUAAGACUUUCAGCUUCAUCGGCUUUCCGUUUAAAUAAAUAAAACGCUGCGGAAGAAGUUUAUCCCGACAAAGUGCUGAGCGGGCUGAAAA -------....(((((.((((((((((.........((((((.((.((....(((((.........)))))..)).)).))))))..........)))))))))).))).)).... ( -29.71) >DroAna_CAF1 54168 115 + 1 ACAGCCGGCAGGACCCACACCCCGCUUAAGACUCUCGGCUUCAUCGGCUUUCCGUUUAAAUAAAUAAAACGCUGCAGAGGAAGUUGAA-CCGACAAAGCGCUGAGCAGGCAAGAAA ...(((.((.((........))(((((.......((((((((.((.((....(((((.........)))))..)).)).)))))))).-......)))))....)).)))...... ( -29.04) >consensus _______GAACCACCCAUUCGGCACUUAAGACUUUCAGCUUCAUCGGCUUUCCGUUUAAAUAAAUAAAACGCUGCGGAAGAAGUUUAUCCCGACAAAGUGCUGAGCGGGCUGAAAA ..............((.((((((((((.........((((((.((.((....(((((.........)))))..)).)).))))))..........)))))))))).))........ (-26.25 = -26.36 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:30 2006