Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,621,603 – 8,621,698 |
Length | 95 |
Max. P | 0.900372 |
Location | 8,621,603 – 8,621,698 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 98.95 |
Mean single sequence MFE | -19.74 |
Consensus MFE | -19.50 |
Energy contribution | -19.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.45 |
Structure conservation index | 0.99 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.900372 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8621603 95 + 22407834 GAAUUCCAUUCAGCUCCCAAUUCCGAGCACCAUUCGAUUAUUCAUUUUAGCCGACAGUCGCCAGGCAACUGUCCAACACAGUUGCAGUUGCACAA ............((((........)))).....(((..((.......))..)))..((.((...((((((((.....))))))))....)))).. ( -19.90) >DroSec_CAF1 49832 95 + 1 GAAUUCCAUUCAGCUCCCAAUUCCGAGCACCAUUCGAUUAUUCAUUUUAGCCGACAGUCGCCAGGCAACUGUCCAACACAGUUGCAGUUGCACAA ............((((........)))).....(((..((.......))..)))..((.((...((((((((.....))))))))....)))).. ( -19.90) >DroSim_CAF1 55494 95 + 1 GAAUUCCAUUCAGCUCCCAAUUCCGAGCACCAUUCGAUUAUUCAUUUUAGCCGACAGUCGCCAGGCAACUGUCCAACACAGUUGCAGUUGCACAA ............((((........)))).....(((..((.......))..)))..((.((...((((((((.....))))))))....)))).. ( -19.90) >DroEre_CAF1 51361 95 + 1 GAAUUCCAUUCAGCUCCCAAUUCCGAGCACCAUUCGAUUAUUCAUUUUAGCCGACAGUCGCCAGGCAACUGUCCAACACAGUUGCAGUUGCAAAA ............((((........)))).....(((..((.......))..))).....((...((((((((.....))))))))....)).... ( -19.50) >DroYak_CAF1 52766 95 + 1 GAAUUCCAUUCAGCUCCCAAUUCCGAGCACCAUUCGAUUAUUCAUUUUAGCCGACAGUCGCCAGGCAACUGUCCAACACAGUUGCAAUUGCAAAA ............((((........)))).....(((..((.......))..))).....((...((((((((.....))))))))....)).... ( -19.50) >consensus GAAUUCCAUUCAGCUCCCAAUUCCGAGCACCAUUCGAUUAUUCAUUUUAGCCGACAGUCGCCAGGCAACUGUCCAACACAGUUGCAGUUGCACAA ............((((........)))).....(((..((.......))..))).....((...((((((((.....))))))))....)).... (-19.50 = -19.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:29 2006