Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,617,941 – 8,618,038 |
Length | 97 |
Max. P | 0.975423 |
Location | 8,617,941 – 8,618,038 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.41 |
Mean single sequence MFE | -27.57 |
Consensus MFE | -18.17 |
Energy contribution | -18.47 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.21 |
Mean z-score | -2.59 |
Structure conservation index | 0.66 |
SVM decision value | 1.74 |
SVM RNA-class probability | 0.975020 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8617941 97 + 22407834 -U-------------UUUUGUUGCUUC-----CACAACUUUGGGGCAAAGCUGCAGAAUUUAUUGCUUUCGAAAUGCGGUUGCGCAUAAAUGUGCAGCAAGCAAA----ACAUGAACAAU -.-------------((((((((((.(-----((......))))))...((((((..(((((((((..(((.....)))..))).)))))).)))))).))))))----).......... ( -28.90) >DroVir_CAF1 61383 90 + 1 UU-------------UUUUGUUGC-----------------AGCGCAAAGCUGCAAAAUUUAUUGCUUUUGAAAUGUGGCUGCGCAUAAAUGUGCAGCAGAACAACUGCAAACAAACAGG ..-------------.((((((((-----------------(((.....)))))).......((((..(((.......((((((((....))))))))....)))..))))))))).... ( -29.60) >DroSec_CAF1 46241 97 + 1 -U-------------UUUUGUUGCUUC-----CACAACUUUGGGGCAAAGCUGCAGAAUUUAUUGCUUUAGAAAUGCGGUUGCGCAUAAAUGUGCAGCAAGCAAA----ACAUGAACAAU -.-------------((((((((((.(-----((......))))))...((((((.(.((((......)))).(((((....)))))...).)))))).))))))----).......... ( -25.30) >DroEre_CAF1 47871 97 + 1 -U-------------UUUUGUUGUUUC-----CUCAACUUUGGGGCAAAGCUGCAGAAUUUAUUGCUUUUGAAAUGCGGUUGCGCAUAAAUGUGCAGCAAGCAAA----ACAUUAACAAU -.-------------(((((((.((((-----((((....))))).)))((((((..(((((((((..(((.....)))..))).)))))).)))))).))))))----).......... ( -26.40) >DroYak_CAF1 49226 97 + 1 -U-------------UUUUGUUGUUUC-----CUCAACUUUGGAGCAAAGCUGCAGAAUUUAUUGCUUUUGAAAUGCGGUUGCGCAUAAAUGUGCAGCAAGCAAA----ACAUUAACAAU -.-------------((((((((((.(-----(........)))))...((((((..(((((((((..(((.....)))..))).)))))).)))))).))))))----).......... ( -24.90) >DroAna_CAF1 49110 110 + 1 -UUUGAUGUUUUUAUUUUUGUUGGCUUGUUGGGGAAACUUCAGCGCAAAGCUGCAGAAUUUAUUGCUUUUGAAAUGCGGUUGCGCAUAAAUGUGCACCA-----A----ACACCAACAAU -................(((((((....(((((....)....(((((..((((((...((((.......)))).)))))))))))...........)))-----)----...))))))). ( -30.30) >consensus _U_____________UUUUGUUGCUUC_____CACAACUUUGGGGCAAAGCUGCAGAAUUUAUUGCUUUUGAAAUGCGGUUGCGCAUAAAUGUGCAGCAAGCAAA____ACAUGAACAAU .................((((((((((..............)))))...((((((..(((((((((..(((.....)))..))).)))))).))))))................))))). (-18.17 = -18.47 + 0.31)
Location | 8,617,941 – 8,618,038 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.41 |
Mean single sequence MFE | -25.67 |
Consensus MFE | -11.90 |
Energy contribution | -12.06 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -3.08 |
Structure conservation index | 0.46 |
SVM decision value | 1.75 |
SVM RNA-class probability | 0.975423 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8617941 97 - 22407834 AUUGUUCAUGU----UUUGCUUGCUGCACAUUUAUGCGCAACCGCAUUUCGAAAGCAAUAAAUUCUGCAGCUUUGCCCCAAAGUUGUG-----GAAGCAACAAAA-------------A- ..........(----((((.(((((((......(((((....))))).......))).....(((..((((((((...))))))))..-----))))))))))))-------------.- ( -27.42) >DroVir_CAF1 61383 90 - 1 CCUGUUUGUUUGCAGUUGUUCUGCUGCACAUUUAUGCGCAGCCACAUUUCAAAAGCAAUAAAUUUUGCAGCUUUGCGCU-----------------GCAACAAAA-------------AA ....((((((.(((((.((...((((((.((((((((.................)).))))))..))))))...)))))-----------------)))))))).-------------.. ( -26.23) >DroSec_CAF1 46241 97 - 1 AUUGUUCAUGU----UUUGCUUGCUGCACAUUUAUGCGCAACCGCAUUUCUAAAGCAAUAAAUUCUGCAGCUUUGCCCCAAAGUUGUG-----GAAGCAACAAAA-------------A- ..........(----((((.(((((((......(((((....))))).......))).....(((..((((((((...))))))))..-----))))))))))))-------------.- ( -27.42) >DroEre_CAF1 47871 97 - 1 AUUGUUAAUGU----UUUGCUUGCUGCACAUUUAUGCGCAACCGCAUUUCAAAAGCAAUAAAUUCUGCAGCUUUGCCCCAAAGUUGAG-----GAAACAACAAAA-------------A- ((((((..((.----..(((((((.(((......)))))))..)))...))..))))))...((((.((((((((...)))))))).)-----))).........-------------.- ( -23.20) >DroYak_CAF1 49226 97 - 1 AUUGUUAAUGU----UUUGCUUGCUGCACAUUUAUGCGCAACCGCAUUUCAAAAGCAAUAAAUUCUGCAGCUUUGCUCCAAAGUUGAG-----GAAACAACAAAA-------------A- ((((((..((.----..(((((((.(((......)))))))..)))...))..))))))...((((.((((((((...)))))))).)-----))).........-------------.- ( -23.20) >DroAna_CAF1 49110 110 - 1 AUUGUUGGUGU----U-----UGGUGCACAUUUAUGCGCAACCGCAUUUCAAAAGCAAUAAAUUCUGCAGCUUUGCGCUGAAGUUUCCCCAACAAGCCAACAAAAAUAAAAACAUCAAA- .((((((((..----(-----((((((......(((((....))))).......))).......((.((((.....)))).)).....))))...))))))))................- ( -26.52) >consensus AUUGUUAAUGU____UUUGCUUGCUGCACAUUUAUGCGCAACCGCAUUUCAAAAGCAAUAAAUUCUGCAGCUUUGCCCCAAAGUUGAG_____GAAGCAACAAAA_____________A_ ......................((((((.((((((((.................)).))))))..))))))................................................. (-11.90 = -12.06 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:25 2006