Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,617,325 – 8,617,417 |
Length | 92 |
Max. P | 0.782112 |
Location | 8,617,325 – 8,617,417 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 81.12 |
Mean single sequence MFE | -21.12 |
Consensus MFE | -13.18 |
Energy contribution | -13.35 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.04 |
Mean z-score | -2.14 |
Structure conservation index | 0.62 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.782112 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8617325 92 - 22407834 CCAGAGCCAGAGCAGCUUGUUAUUAUUAUUUUUUGCCUUCAAUGGCAAAAGUUGUAGUAGGAAACAACAAUUUCU-----GCAAC------------CCCACCCCC--------GCA ...........((((.((((((((((...((((((((......))))))))..))))).(....))))))...))-----))...------------.........--------... ( -21.30) >DroSec_CAF1 45624 91 - 1 CCCGAGCCA-AGCAGCUUGUUAUUAUUAUUUUUUGCCCUCAAUGGCAAAAGUUGUAGUAGGAAACAACAAUUUCU-----GCACC------------CACACCCCC--------GCA .........-.((((.((((((((((...((((((((......))))))))..))))).(....))))))...))-----))...------------.........--------... ( -20.10) >DroSim_CAF1 51310 91 - 1 CCCGAGCCA-AGCAGCUUGUUAUUAUUAUUUUUUGCCCUCAAUGGCAAAAGUUGUAGUAGGAAACAACAAUUUCU-----GCACC------------CACACCCCC--------GCA .........-.((((.((((((((((...((((((((......))))))))..))))).(....))))))...))-----))...------------.........--------... ( -20.10) >DroEre_CAF1 47255 111 - 1 CCAGAGCCA-AGCAGCUUGUUAUUAUUAUUUUUUGCCUUCAAUGGUAAAAGUUGUAGUAGCAAACAACAAUUUCU-----CCAAAACCACCAACACCCCCACCCACAACCCUCAGCC ...((((..-....))))((((((((...((((((((......))))))))..))))))))..............-----..................................... ( -18.10) >DroYak_CAF1 48560 96 - 1 CCGGAGCCA-AGCAGCUUGUUAUUAUUAUUUUUUGCCCUCAAUGGUAAAAGUUGUAGUAGGAAACAACAAUUUCU-----CCACCACC-------CCCCAACCCAC--------CCA ..((((...-.(((((((.((((((((.............))))))))))))))).((.(....).)).....))-----))......-------...........--------... ( -17.42) >DroAna_CAF1 48641 94 - 1 CCGCUGCGA-GGCAGCUUGUUAUUAUUAUUUUUUCCCUUCAAUGGCAAAAGUUGUAGCAGGAAACAACAAUUUCUGGGCUGCAGC------------AGCACCAC----------CA ..(((((..-.((((((((((((....((((((..((......)).)))))).))))).(....)..........))))))).))------------))).....----------.. ( -29.70) >consensus CCAGAGCCA_AGCAGCUUGUUAUUAUUAUUUUUUGCCCUCAAUGGCAAAAGUUGUAGUAGGAAACAACAAUUUCU_____GCACC____________CCCACCCCC________GCA .....((....)).(.(((((.(((((((((((((((......))))))))..)))))))..))))))................................................. (-13.18 = -13.35 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:22 2006