Locus 302

Sequence ID 2L_DroMel_CAF1
Location 871,639 – 871,735
Length 96
Max. P 0.603673
window482

overview

Window 2

Location 871,639 – 871,735
Length 96
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 78.14
Mean single sequence MFE -30.40
Consensus MFE -18.88
Energy contribution -19.99
Covariance contribution 1.11
Combinations/Pair 1.36
Mean z-score -1.43
Structure conservation index 0.62
SVM decision value 0.14
SVM RNA-class probability 0.603673
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 871639 96 + 22407834
-----------------GCCUCGUAUAGUUCCACUGCAAUUGCUGAGGUGCCUGCGGGUGCUUUUGGACAAUAAUGGUGGAAUUUUAAGUGCAGUGGAGGUGAAACGCAUUUC
-----------------(((((((((((((((((((..(((((..(((..((....))..).))..).))))..))))))))))....))))....)))))............ ( -29.90)
>DroPse_CAF1 1 95 + 1
------------------CCGCGAAUAGUACCAUUACAGUUAUUGAAGUGCCUACGGGUGCUCCUAGACAACAAUGGUGGCAUUUUGAGCGCUCUGGAAGUGAAGCGCAUAGC
------------------..(((.....(((((((...(((...(.((..((....))..)).)..)))...))))))).((((((.((....)).))))))...)))..... ( -27.00)
>DroGri_CAF1 1 95 + 1
------------------CCACGAAUAGUGCCAUUGCAGUUGUUGAAGUGCCUUCGGGUGCUUCUGGACACCAAUGGUGGUAUACUAAGCGCAACGGAAGUGAAGCGGAUAGC
------------------((....(((.((((((((..(((...((((..((....))..))))..)))..)))))))).))).....((...((....))...))))..... ( -35.70)
>DroSec_CAF1 1 95 + 1
------------------CCUCGCAUAGUUCCACUGCAAUUGCUGAGGUGCCUGCGGGUGCUUUUGGACAACAAUGGUGGAAUUUUAAGUGCAGUAGAGGUGAAACGCAUUUC
------------------....((((((((((((((...((((..(((..((....))..).))..).)))...))))))))))....))))....((((((.....)))))) ( -27.90)
>DroEre_CAF1 3228 113 + 1
AAUAUUUUUAUUUAACAGCCUCGAAUAGUUCCACUGCAAUUGCUGAGGUGCCUGCGGGUGCUUUUAGACAACAAUGGUGGAAUUUUAAGUGCUGUGGAGGUGAAACGCAUUUC
.....((((((((.(((((((..((..(((((((((...(((((((((..((....))..).))))).)))...)))))))))))..)).)))))..))))))))........ ( -34.90)
>DroPer_CAF1 1 95 + 1
------------------CCGCGAAUAGUACCAUUACAGUUAUUGAAGUGCCUACGGGUGCUCCUAGACAACAAUGGUGGCAUUUUGAGCGCUCUGGAAGUGAAGCGCAUAGC
------------------..(((.....(((((((...(((...(.((..((....))..)).)..)))...))))))).((((((.((....)).))))))...)))..... ( -27.00)
>consensus
__________________CCUCGAAUAGUUCCACUGCAAUUGCUGAAGUGCCUGCGGGUGCUUCUAGACAACAAUGGUGGAAUUUUAAGCGCAGUGGAAGUGAAACGCAUAGC
..........................((((((((((..((((((((((..((....))..)))).)).))))..))))))))))....(((..............)))..... (-18.88 = -19.99 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:29 2006