Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,615,929 – 8,616,046 |
Length | 117 |
Max. P | 0.812359 |
Location | 8,615,929 – 8,616,046 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 80.29 |
Mean single sequence MFE | -24.64 |
Consensus MFE | -16.03 |
Energy contribution | -17.54 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.22 |
Mean z-score | -1.95 |
Structure conservation index | 0.65 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812359 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8615929 117 + 22407834 AGUCUCAACAAGCUCUCGACCACAUCCUCCAGUACUACUUGUAUAAUUGCUAAUCAAAAGGGGGAGCUCCGCCAAUGGACAUCUUCAAUAAUCCCCCAUAGUGCCUCCUCGCACUAU .......(((((..((.((........)).)).....))))).................((((((..((((....))))............))))))(((((((......))))))) ( -23.24) >DroSec_CAF1 44220 113 + 1 GCUCUCAACAAGCUCUCGACCACAU---CCAGUACUACUUGUAUAAUUGCUAAUCAAAAGGGGGGGCUCCGC-AAUGGAGCUCUCCAAUAAUCCUCCAUAGUGCCUCCUCGCACUAU ((.....(((((..((.((.....)---).)).....)))))......))..........((((((((((..-...))))))))))...........(((((((......))))))) ( -30.10) >DroSim_CAF1 49923 113 + 1 GGUCUCAACAAGCUCUCGACCACAU---CCAGUACUCCUUGUAUAAUUGCUAAUCAAAAGGGGGAGCUCCGC-AAUGGAGCUCUUCAAUAAUCCUCCAUAGUGCCUCCUCGCACUAU ((((.............))))....---...((((.....))))................((((((((((..-...))))))))))...........(((((((......))))))) ( -30.52) >DroEre_CAF1 46010 97 + 1 --GCUCAGCAAGCGCUCGACCACAU---UCAGCACUACUUGUAUAAUUUCCAAUUAA-AGUAGGAUCUUCUC-AAUGGACUGCUCCAAUAAUCCAGCA-------------CACCAU --(((.....)))(((.((......---))))).((((((................)-))))).........-.((((..((((..........))))-------------..)))) ( -14.69) >consensus GGUCUCAACAAGCUCUCGACCACAU___CCAGUACUACUUGUAUAAUUGCUAAUCAAAAGGGGGAGCUCCGC_AAUGGACCUCUCCAAUAAUCCUCCAUAGUGCCUCCUCGCACUAU .......(((((.........................))))).................(((((((((((......)))))..........))))))(((((((......))))))) (-16.03 = -17.54 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:17 2006