| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,615,397 – 8,615,513 |
| Length | 116 |
| Max. P | 0.851410 |
| Location | 8,615,397 – 8,615,513 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 87.03 |
| Mean single sequence MFE | -19.18 |
| Consensus MFE | -18.23 |
| Energy contribution | -18.20 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.851410 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8615397 116 - 22407834 GCCGGCGCAUCUUGUUAUUUGUAGCAAUUAAUAUCCAAUAUCUGGGUGCUGGCAUCAUUAGUUUAUUUUCCUUUCGCUGCCAACUUUAUUU--UUAUUCCCUUUCCAACAAAUAUAUG ((((((((...((((((....)))))).......(((.....)))))))))))......................................--......................... ( -20.60) >DroSec_CAF1 43704 114 - 1 GCCGGCGCAUCUUGUUAUUUGUAGCAAUUAAUAUCCAAUAUCUGGGUGCUGGCAUCAUUAGUUUAUUUUCCUUUCGCUGCCAACUUUAUUU--UUAUUCCCUUUCCAACUAAUAUG-- ((((((((...((((((....)))))).......(((.....)))))))))))...(((((((............................--.............)))))))...-- ( -21.68) >DroSim_CAF1 49406 114 - 1 GCCGGCGCAUCUUGUUAUUUGUAGCAAUUAAUAUCCAAUAUCUGGGUGCUGGCACCAUUAGUUUAUUUUCCUUUCGCUGCCAACUUUAUUU--UUAUUCCCUUUCCAACCAAUAUG-- ((((((((...((((((....)))))).......(((.....)))))))))))......................................--.......................-- ( -20.60) >DroEre_CAF1 45492 112 - 1 GCCAGCGCAUCUUGUUAUUUGUACCAAUUAAUAUCCAAUAUCUGGGUGCUGGCAUCAUUAGUUUAUUUUC-UUUCUCUGCCAACUUUACUU--UU-CUCCCUUUCCAAAAAAUAUC-- ((((((((....(((((.(((...))).))))).(((.....))))))))))).................-....................--..-....................-- ( -19.70) >DroYak_CAF1 46526 115 - 1 GGCAGCGCAUCUUGUUAUUUGUACCAAUUAAUAUCCAAUAUCUGGGCGCUGGCAUCAUUAGUUUAUUUUCCUUUCCUUGCCAACUUUAUUUUAUU-CUUCCUUUUCAACAAAUAUG-- (.((((((....(((((.(((...))).))))).(((.....))))))))).)..........................................-....................-- ( -17.00) >DroAna_CAF1 44236 112 - 1 GGAAGCGCAUCUUGUUAUUUGUAACAAUUAAUAUCCAAUAUCUGGGUGCUGCCAUCAUUAGUUUAUUUUCCUUCCUCUUCAAUCCAUGCCA--UU-UUUCUUCUAC-ACAAAAGUG-- ((.(((((...((((((....)))))).......(((.....)))))))).))....................................((--((-(((.......-..)))))))-- ( -15.50) >consensus GCCAGCGCAUCUUGUUAUUUGUAGCAAUUAAUAUCCAAUAUCUGGGUGCUGGCAUCAUUAGUUUAUUUUCCUUUCGCUGCCAACUUUAUUU__UU_UUCCCUUUCCAACAAAUAUG__ ((((((((...((((((....)))))).......(((.....)))))))))))................................................................. (-18.23 = -18.20 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:16 2006