Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,612,673 – 8,612,774 |
Length | 101 |
Max. P | 0.634630 |
Location | 8,612,673 – 8,612,774 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 91.99 |
Mean single sequence MFE | -20.95 |
Consensus MFE | -18.75 |
Energy contribution | -18.78 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.05 |
Mean z-score | -1.26 |
Structure conservation index | 0.90 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.634630 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8612673 101 + 22407834 UGCGAGGACCUUCUGCCCACAGUUUGCAACAAUUGCGCAUAAUAUAAAUUAAUAAUGCAACAAUUGCAUUUUGUUAUGCUUCCAUCUCCACGCU----GUUGUGC .(((.(((....(((....)))...(((.....)))((((((((.........((((((.....)))))).)))))))).......))).))).----....... ( -21.20) >DroSec_CAF1 40949 101 + 1 UGCGAGGACCUUCUGCCCACAGUUUGCAACAAUUGCGCAUAAUAUAAAUUAAUAAUGCAACAAUUGCAUUUUGUUAUGCUUCCAUCUCCACGCU----GUUGUGC .(((.(((....(((....)))...(((.....)))((((((((.........((((((.....)))))).)))))))).......))).))).----....... ( -21.20) >DroSim_CAF1 46669 101 + 1 UGCGAGGACCUUCUGCCCACAGUUUGCAACAAUUGCGCAUAAUAUAAAUUAAUAAUGCAACAAUUGCAUUUUGUUAUGCUUCCAUCCCCACGCU----GUUGUGC .(((.((.....(((....)))...(((.....)))((((((((.........((((((.....)))))).))))))))........)).))).----....... ( -20.10) >DroEre_CAF1 42704 105 + 1 UGCGAGGACCUUCUGCCCACAGUUUGCAACAAUUGCGCAUAAUAUAAAUUAAUAAUGCAACAAUUGCAUUUUGUUAUGCUUCCAUCUCCACGCUGUCUGUUGUGC .(((.(((....(((....)))...(((.....)))((((((((.........((((((.....)))))).)))))))).......))).)))............ ( -21.20) >DroYak_CAF1 43602 101 + 1 UGCGAGGACUUUCUGCCCACAGUUUGCAACAAUUGCGCAUAAUAUAAAUUAAUAAUGCAACAAUUGCAUUUUGUUAUGCUUCCAUCUCCACGCU----GUUGUGC .(((.(((....(((....)))...(((.....)))((((((((.........((((((.....)))))).)))))))).......))).))).----....... ( -21.20) >DroAna_CAF1 41552 88 + 1 GGAGAGGAC-------------UCUGCAACAAUUGCGCAUAAUAUAAAUUAAUAAUGCAACAAUUGCAUUUUGUUAUGCUUCCAUCGCCACAUU----GUUGUGC ((.(((((.-------------...(((.....)))((((((((.........((((((.....)))))).)))))))).))).)).))(((..----..))).. ( -20.80) >consensus UGCGAGGACCUUCUGCCCACAGUUUGCAACAAUUGCGCAUAAUAUAAAUUAAUAAUGCAACAAUUGCAUUUUGUUAUGCUUCCAUCUCCACGCU____GUUGUGC .(((.((..................(((.....)))((((((((.........((((((.....)))))).))))))))........)).)))............ (-18.75 = -18.78 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:15 2006