| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,610,845 – 8,610,945 |
| Length | 100 |
| Max. P | 0.761377 |
| Location | 8,610,845 – 8,610,945 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 77.58 |
| Mean single sequence MFE | -15.56 |
| Consensus MFE | -8.40 |
| Energy contribution | -9.28 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.761377 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8610845 100 + 22407834 CCGCAAAACGUUAUAAUGUUUGGAGGAUGCGGUUCUUCAUCGCCUCCCAACCCCCAACCCACUACUCAUUCCCAUUCCACUCAAGCAACAAUAACAAUUA ..((.((((((....))))))((.(((.(((((.....))))).)))...))................................)).............. ( -13.90) >DroSec_CAF1 39189 91 + 1 CCACAAAACGUUAUAAUGUUUGGAGGAUGCGGUUCUUCAUCGCCUCCCAACC---------CCAUUCAUGCCCAUUCCACUCAAGCAACAAUAACAAUUA .........(((((.(((..(((.(((.(((((.....))))).))).....---------)))..)))((.............))....)))))..... ( -15.62) >DroSim_CAF1 44901 100 + 1 CCACAAAACGUUAUAAUGUUUGGAGGAUGCGGUUCUUCAUCGCCUCCCAACCACCUACCCACUACUCAUGACCAUUCCACUCAAGCAACAAUAACAAUUA .........(((((..(((((((.(((.(((((.....))))).))).................(....)..........)))))))...)))))..... ( -16.10) >DroEre_CAF1 40904 83 + 1 CCACAAAACGUUAUAAUGUUUGGAGGAUGCGGUUCUGCCUUG--------------CCCCCCCAU---UUUCCCUUCCACUCGAGCAACAAUAACAAUUA .........(((((..(((((((((((((.((....((...)--------------)...)))))---))))).........)))))...)))))..... ( -14.10) >DroAna_CAF1 39718 76 + 1 CCACAAAACGUUAUAAUGUUUGGGGGAUGCGGUUAUUCAUCGCCUCCCA------------------------CUGCCACUCAAGUAACAAUAACAAUUA .........(((((..((..(((((((.(((((.....))))).)))).------------------------...)))..)).)))))........... ( -18.10) >consensus CCACAAAACGUUAUAAUGUUUGGAGGAUGCGGUUCUUCAUCGCCUCCCAACC_____CCC_CCACUCAUGCCCAUUCCACUCAAGCAACAAUAACAAUUA .........(((((..(((((((((((.(((((.....))))).)))............................))))....))))...)))))..... ( -8.40 = -9.28 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:11 2006