Locus 3013

Sequence ID 2L_DroMel_CAF1
Location 8,609,434 – 8,609,541
Length 107
Max. P 0.668358
window4795

overview

Window 5

Location 8,609,434 – 8,609,541
Length 107
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 94.01
Mean single sequence MFE -34.45
Consensus MFE -29.71
Energy contribution -29.93
Covariance contribution 0.22
Combinations/Pair 1.07
Mean z-score -1.54
Structure conservation index 0.86
SVM decision value 0.29
SVM RNA-class probability 0.668358
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8609434 107 + 22407834
CUGCUGCUGUUGUUGAUUAUUCAAGGAUCAG-----AGCGGCACAAACAAAGCACAUGGCAGCAGUCAGCGGAGCA-ACUUCUGCACUCAGCGUACAAAUUUCGCCG-------GCUGCA
.((((((((((.((((....)))).)))...-----)))))))........((.....)).((((((.((((((..-..)))))).....(((.........))).)-------))))). ( -34.70)
>DroSec_CAF1 37791 107 + 1
CUGCUGCUGUUGUUGAUUAUUCAAGGAUCAG-----AGCGGCACAAACAAAGCACAUGGCAGCAGUCAGCGGAGCA-ACUUCUGCACUCAGCGUAUAAAUUUCGCCG-------GCUGCA
.((((((((((.((((....)))).)))...-----)))))))........((.....)).((((((.((((((..-..)))))).....(((.........))).)-------))))). ( -34.70)
>DroSim_CAF1 43491 107 + 1
CUGCUGCUGUUGUUGAUUAUUCAAGGAUCAG-----AGCGGCACAAACAAAGCACAUGGCAGCAGUCAGCGGAGCA-ACUUCUGCACUCAGCGUAUAAAUUUCGCCG-------GCUGCA
.((((((((((.((((....)))).)))...-----)))))))........((.....)).((((((.((((((..-..)))))).....(((.........))).)-------))))). ( -34.70)
>DroEre_CAF1 39473 107 + 1
CUGCUGCUGUUGUUGAUUAUUCAAGGAUCAG-----AGCGGCACAAACAAAGCACAUGGCAGCAGUCAGCGGAGCA-ACUUCUGCACUCAGCGUAUAAAUUUCGCCG-------GCUGCA
.((((((((((.((((....)))).)))...-----)))))))........((.....)).((((((.((((((..-..)))))).....(((.........))).)-------))))). ( -34.70)
>DroYak_CAF1 40264 112 + 1
CUGCUGCUGUUGUUGAUUAUUCAAGGAUCAGAGCAGAGCGGCACAAACAAAGCACAUGGCAGCAGUCAGCGGAGCA-ACUUCUGCACUCAGCGUAUAAAUUUCGCCG-------GCUGCA
.(((((((.(((((((((.......)))))..)))))))))))........((.....)).((((((.((((((..-..)))))).....(((.........))).)-------))))). ( -35.40)
>DroAna_CAF1 38317 115 + 1
CUGCUCCUGUUGUUGAUUAUUCAAGGAUCAG-----AGCCGCACAAACAAAGCACAUGGCAGCAGUCAGUGGAGAAAACUUUAGCACUCAGCGUAUAAAUUUCGCCGGCUGCCGGCUGCA
..((((..(((.((((....)))).)))..)-----)))............(((..(((((((......(((.((((......((.....)).......)))).))))))))))..))). ( -32.52)
>consensus
CUGCUGCUGUUGUUGAUUAUUCAAGGAUCAG_____AGCGGCACAAACAAAGCACAUGGCAGCAGUCAGCGGAGCA_ACUUCUGCACUCAGCGUAUAAAUUUCGCCG_______GCUGCA
.(((((((....((((((.......)))))).....)))))))...............(((((.....((((((.....)))))).....(((.........))).........))))). (-29.71 = -29.93 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:10 2006