Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,606,250 – 8,606,360 |
Length | 110 |
Max. P | 0.927065 |
Location | 8,606,250 – 8,606,360 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 84.30 |
Mean single sequence MFE | -29.08 |
Consensus MFE | -24.26 |
Energy contribution | -25.30 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.04 |
Mean z-score | -2.02 |
Structure conservation index | 0.83 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.927065 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8606250 110 + 22407834 UUGCCACUGAUAGUGCUCCGGCUUCCAUUGCACUUGG-UUGGAUUUCCAUUUUUU------GUUCGUAGUGUUUUUUGGUGGCGAAACUUAUUCGCAGCUGUGCAAAUUUGUGCAGC (((((((..(.((..((.(((...(((.......)))-.(((....)))......------..))).))..))..)..)))))))............((((..((....))..)))) ( -32.40) >DroSec_CAF1 34605 108 + 1 UUGCCACUGAUAGUGCUCCGGCUUCCAUUGCACUUAG-UUGGAUUUCCAUUUUUU-------UUCGUCCUGUUU-UUGGUGGCGAAACUUUUUCGCAGCUGUGCAAAUUUGUGCAGC (((((((..(.(((((...((...))...)))))...-.(((....)))......-------............-)..)))))))............((((..((....))..)))) ( -30.80) >DroSim_CAF1 40296 109 + 1 UUGCCACUGAUAGUGCUCCGGCUUCCAUUGCACUUGG-UUGGAUUUCCAUUUUUU------GUUCGUCCUGUUU-UUGGUGGCGAAACUUUUUCGCAGCUGUGCAAAUUUGUGCAGC (((((((..(.(((((...((...))...)))))...-..((((...((.....)------)...)))).....-)..)))))))............((((..((....))..)))) ( -31.80) >DroYak_CAF1 36988 115 + 1 UUGCCAGUGAUAGUGCUCGGGCUUCCAUUGCACUUGC-UUGGAUUUCCAUUUUUUAUUUUUUUUCAUCCUGUUU-UUGGUGGCGAAACUUUUUUGCAGCUGUGCAAAUUUGUGCAGC ..(((((.(((((.....(((..((((..((....))-.))))..)))((.....))...........))))).-))))).(((((.....))))).((((..((....))..)))) ( -29.20) >DroAna_CAF1 35784 115 + 1 UUGCCCCUGAUAGCGCACGGGUUUCCAUUCCUCCUAUAUUUUUUUUCUAUUUUCCAUUUUUUUUGUUUUUACGU-UUGGUGGCAAAACUU-UUCGCAGCUGUGCAAAUUUGUGCAGC (((((((....((((...(((.......))).......................((.......))......)))-).)).))))).....-......((((..((....))..)))) ( -21.20) >consensus UUGCCACUGAUAGUGCUCCGGCUUCCAUUGCACUUGG_UUGGAUUUCCAUUUUUU______GUUCGUCCUGUUU_UUGGUGGCGAAACUUUUUCGCAGCUGUGCAAAUUUGUGCAGC ((((((((((..((((...((...))...))))......(((....)))..........................))))))))))............((((..((....))..)))) (-24.26 = -25.30 + 1.04)
Location | 8,606,250 – 8,606,360 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 84.30 |
Mean single sequence MFE | -23.62 |
Consensus MFE | -17.26 |
Energy contribution | -18.70 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.05 |
Mean z-score | -1.83 |
Structure conservation index | 0.73 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.730885 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8606250 110 - 22407834 GCUGCACAAAUUUGCACAGCUGCGAAUAAGUUUCGCCACCAAAAAACACUACGAAC------AAAAAAUGGAAAUCCAA-CCAAGUGCAAUGGAAGCCGGAGCACUAUCAGUGGCAA ((((..((....))..))))...(((.....)))(((((.................------......(((....))).-...(((((..(((...)))..)))))....))))).. ( -25.80) >DroSec_CAF1 34605 108 - 1 GCUGCACAAAUUUGCACAGCUGCGAAAAAGUUUCGCCACCAA-AAACAGGACGAA-------AAAAAAUGGAAAUCCAA-CUAAGUGCAAUGGAAGCCGGAGCACUAUCAGUGGCAA ((..(.....((((((....))))))....(((((((.....-.....)).))))-------).....(((....))).-...(((((..(((...)))..)))))....)..)).. ( -26.30) >DroSim_CAF1 40296 109 - 1 GCUGCACAAAUUUGCACAGCUGCGAAAAAGUUUCGCCACCAA-AAACAGGACGAAC------AAAAAAUGGAAAUCCAA-CCAAGUGCAAUGGAAGCCGGAGCACUAUCAGUGGCAA ((..(.....((((((....))))))...(((.((((.....-.....)).)))))------......(((....))).-...(((((..(((...)))..)))))....)..)).. ( -25.20) >DroYak_CAF1 36988 115 - 1 GCUGCACAAAUUUGCACAGCUGCAAAAAAGUUUCGCCACCAA-AAACAGGAUGAAAAAAAAUAAAAAAUGGAAAUCCAA-GCAAGUGCAAUGGAAGCCCGAGCACUAUCACUGGCAA ((((((......))))(((.(((.......(((((((.....-.....)).)))))............(((....))).-)))(((((..(((....))).)))))....))))).. ( -23.00) >DroAna_CAF1 35784 115 - 1 GCUGCACAAAUUUGCACAGCUGCGAA-AAGUUUUGCCACCAA-ACGUAAAAACAAAAAAAAUGGAAAAUAGAAAAAAAAUAUAGGAGGAAUGGAAACCCGUGCGCUAUCAGGGGCAA ((((..((....))..))))......-.....(((((.((..-..((....))..............................((.((.((((....))))...)).)).))))))) ( -17.80) >consensus GCUGCACAAAUUUGCACAGCUGCGAAAAAGUUUCGCCACCAA_AAACAGGACGAAA______AAAAAAUGGAAAUCCAA_CCAAGUGCAAUGGAAGCCGGAGCACUAUCAGUGGCAA ((((..((....))..))))..............(((((.............................(((....))).....(((((..(((...)))..)))))....))))).. (-17.26 = -18.70 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:09 2006