Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 871,399 – 871,494 |
Length | 95 |
Max. P | 0.735615 |
Location | 871,399 – 871,494 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 93.03 |
Mean single sequence MFE | -35.37 |
Consensus MFE | -26.87 |
Energy contribution | -27.43 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.08 |
Mean z-score | -3.01 |
Structure conservation index | 0.76 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.735615 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 871399 95 - 22407834 AGGUGUGACCAUACGC-AACGUGUGCGCGUGUGUUGGAUCGUGCGUGUGUGCACCGACACUCGCUUUUGUUGGUAUGGGUGUCUUAAUAGAUACUA ........((((((.(-((((.....(((.(((((((...(..(....)..).))))))).)))...)))))))))))((((((....)))))).. ( -36.40) >DroSec_CAF1 8843 95 - 1 AGGUGUGACCAUACGC-AACGUGUGCGCGUGUGUUGGAUCGUGCGUGUGUGCAGCGACACUCGCUUUUGUUGGUAUGGGUGUCUUAAUAGAUACUA ........((((((.(-((((((..((((..((......))..))))..)))((((.....))))...))))))))))((((((....)))))).. ( -38.40) >DroYak_CAF1 9065 94 - 1 AGGUAUGACCAUACGCGAACGUGUG--CGUGUGUUGGAUCGUGCGUGUGUGUAGCGACGCUUACUUUUGUUGGUAUGCGUGUCUUAAUAGAUACUA ..(((((((((((((((........--)))))).))).))))))....(((((.(((((........))))).)))))((((((....)))))).. ( -31.30) >consensus AGGUGUGACCAUACGC_AACGUGUGCGCGUGUGUUGGAUCGUGCGUGUGUGCAGCGACACUCGCUUUUGUUGGUAUGGGUGUCUUAAUAGAUACUA ........((((((......(..((((((..((......))..))))))..)..(((((........)))))))))))((((((....)))))).. (-26.87 = -27.43 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:28 2006