Locus 3008

Sequence ID 2L_DroMel_CAF1
Location 8,591,566 – 8,591,682
Length 116
Max. P 0.622203
window4785

overview

Window 5

Location 8,591,566 – 8,591,682
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.34
Mean single sequence MFE -23.40
Consensus MFE -16.32
Energy contribution -17.44
Covariance contribution 1.12
Combinations/Pair 1.12
Mean z-score -1.68
Structure conservation index 0.70
SVM decision value 0.18
SVM RNA-class probability 0.622203
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8591566 116 - 22407834
AACUCAAUCA--AAAAA--GAAAGCAAUCACCUUAGCACUUGAACCGAAAGGAGUAUAAUAAUGAGGAGAAUAAGAAUAUUCAACGAAAAUGCAUUUUUGCACUUUUCGCGGUGCGUUGC
..........--.....--....(((((((((............((....))................(((((....)))))..((((((((((....)))).)))))).)))).))))) ( -25.40)
>DroSec_CAF1 27057 118 - 1
AACUCAAAAAAAAAAAA--GGAAGCAAUCACCUUAGCACUUGAACCGAAAGGAGUAUUAUAAUGAGAAGGAUAAGAAUAUUCAACGGAAAUGCUGUUUUGCACUUUUCGCGGAGCGUUGC
.................--....(((((..((((..((..(((.((....))....)))...))..)))).........(((..(((((((((......))).))))))..))).))))) ( -22.20)
>DroSim_CAF1 32681 115 - 1
AACUCAGAAA---AAAA--GGAAGCAAUCACCUUAGCUCUUGAACCGAAAGGAGUAUAAUAAUGAGCAGAAUAAGAAUAUUCAACGAAAAUGCAGUUUUGCACUUUUCGCGGUGCGUUGC
..........---....--....(((((((((...((((.((..((....))..)).......)))).(((((....)))))..(((((((((......))).)))))).)))).))))) ( -27.90)
>DroEre_CAF1 28650 114 - 1
AACAUAACUU---AAAA--AAAAGCAAUCACCCUAGCACUUGAACCGAAAGGAGUA-AAUAAUGAGGAGAGUAAGAAUAUUCAACGAAAAUGCAAUUUUGCACUUUUCGCCGUGCUUUGC
..........---....--....((((.......(((((.....((....))....-........((.(((((....)))))..((((((((((....)))).))))))))))))))))) ( -24.41)
>DroYak_CAF1 29184 104 - 1
UACAGAACAA---AAAAUAAAGAGCAAUAACCCUAGCACUUGAACCGAAAGAA------------UGAAAAUAAGAAUAUUCAACGAAAAUGCAGU-UUGCACUUUUCGCCGUGCUUUGC
..........---..........((((.......((((((((((.(....).(------------(....)).......)))))(((((((((...-..))).))))))..))))))))) ( -17.11)
>consensus
AACUCAAAAA___AAAA__GAAAGCAAUCACCUUAGCACUUGAACCGAAAGGAGUAUAAUAAUGAGGAGAAUAAGAAUAUUCAACGAAAAUGCAGUUUUGCACUUUUCGCGGUGCGUUGC
.......................(((((((((............((....))................(((((....)))))..(((((((((......))).)))))).)))).))))) (-16.32 = -17.44 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:00 2006