Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,580,869 – 8,580,966 |
Length | 97 |
Max. P | 0.930250 |
Location | 8,580,869 – 8,580,966 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 75.08 |
Mean single sequence MFE | -24.32 |
Consensus MFE | -13.21 |
Energy contribution | -13.80 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.36 |
Mean z-score | -2.03 |
Structure conservation index | 0.54 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.930250 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8580869 97 - 22407834 CCCAGAACAGUAACCAAUUUUCU--GUGCAAGAGAGUUCAAUCGACAUUUGGCAUUUCAUU-UAAACUUGAGCAGAAG---UCGAUGAUGGUUACUGAAGAUA .......((((((((((((((((--.....)))))))(((.(((((.((((....((((..-......)))))))).)---))))))))))))))))...... ( -28.80) >DroPse_CAF1 32731 101 - 1 CCUAAAACACUUGCCACUUGCCUUCGUGUGUGGCAGUUUCGUUUACAUUUCACC-AACAUUUUCAGAAAUA-CCAAAGUCUUCAUCGAUGGUUACUGCGGAUA ....((((..(((((((.(((....))).)))))))....))))..........-...(((..(((....(-(((..(.......)..))))..)))..))). ( -17.10) >DroSec_CAF1 16415 97 - 1 CCCAGAACAGUAACCAAUUUUCU--GUGCAAGAGAGUUCAAUCGACAUUUGGCAUUUCAUU-UAAACUUGAGCAGAAG---UCGAUGAUGGUUACUGAAGAUA .......((((((((((((((((--.....)))))))(((.(((((.((((....((((..-......)))))))).)---))))))))))))))))...... ( -28.80) >DroSim_CAF1 21857 97 - 1 CCCAGAACAGUAACCAAUUUUCU--GUGCAAGAGAGUUCAAUCGACAUUUGGCAUUUCAUU-UAAACUUGAGCAGAAG---UCGAUGAUGGUUACUGAAGAUA .......((((((((((((((((--.....)))))))(((.(((((.((((....((((..-......)))))))).)---))))))))))))))))...... ( -28.80) >DroEre_CAF1 17022 97 - 1 CCCAAAACAGCAACCAAUUUUCU--GUGUAAGAGAGUACAAUCGACAUUUGGCAUUUCAUU-UAGACUUGAGCACAAG---UCGAUGAUGGUUACUGAAGAUA .......(((.((((((((((((--.....)))))))...((((((..(((((...(((..-......))))).))))---)))))..))))).)))...... ( -23.80) >DroAna_CAF1 16781 97 - 1 GCCA-AACAAUGAGGCAGCUCCA--UUGUAGGGAGAAGCAAUCCACAUUUAGCUUUUCAUUUUCAACUUCAGCAAAAG---UCGAUGAUGGUUACUGUGAAAA .((.-.((((((((....)).))--))))..))..........((((..(((((..(((((....((((......)))---).))))).))))).)))).... ( -18.60) >consensus CCCAGAACAGUAACCAAUUUUCU__GUGCAAGAGAGUUCAAUCGACAUUUGGCAUUUCAUU_UAAACUUGAGCAGAAG___UCGAUGAUGGUUACUGAAGAUA .......(((((((((((((((.........))))))...(((((..(((.((..................)).)))....)))))..)))))))))...... (-13.21 = -13.80 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:58 2006