Locus 3002

Sequence ID 2L_DroMel_CAF1
Location 8,568,656 – 8,568,763
Length 107
Max. P 0.969040
window4775

overview

Window 5

Location 8,568,656 – 8,568,763
Length 107
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 89.14
Mean single sequence MFE -18.84
Consensus MFE -16.23
Energy contribution -17.16
Covariance contribution 0.94
Combinations/Pair 1.12
Mean z-score -2.30
Structure conservation index 0.86
SVM decision value 1.64
SVM RNA-class probability 0.969040
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8568656 107 - 22407834
UUUCUUUGAUGACAACAAGCACAUCGUUAUGUUUCGCCAAUGAAUGAAUUUCA-AUUUCAGUUUUGGCUUACGUAAUCCUCCAUAAUCCCUAUCAUCAAUUUAACUAU---------
.....(((((((.............(((((((...(((((....((((.....-..))))...)))))..)))))))...............))))))).........--------- ( -19.59)
>DroSec_CAF1 4460 107 - 1
UUUCUUUGAUGACAACAAGCUCAUCGUUACGUUUCGCCUAUGAAUGAAUUUCA-AUUUCAUUUUUGGCUUACGUAAUCCUCCGUAAUCCCUAUCAUCAAUUUAACUAU---------
.....(((((((......((.....(((((((...(((...(((((((.....-..)))))))..)))..))))))).....))........))))))).........--------- ( -22.44)
>DroSim_CAF1 9409 116 - 1
UUUCUUUGCUGACAUCAAGCUCAUCGUUACGUUUCGCCUAUGAAUGAAUUUCA-AUUUCAUUUUUGGCUUACGUAAUCCUCCGUAAUCCCUAUCAUCAAUUUAACUAUGCUGUAAUA
.......(((.......))).....(((((((...(((...(((((((.....-..)))))))..)))..)))))))........................................ ( -19.20)
>DroEre_CAF1 4555 108 - 1
UUUCUUGGAUGACAACAAGCACAUCGUUACGUUUUGUCUAUGAAUGAAUUUCAAAUUAUUUUUUUGGCUUACGUAAUCCUCCGUAAUCCCUAGCAUCAAUUUAACUAU---------
.......((((..............(((((((...(((...((((((........))))))....)))..)))))))................))))...........--------- ( -14.11)
>consensus
UUUCUUUGAUGACAACAAGCACAUCGUUACGUUUCGCCUAUGAAUGAAUUUCA_AUUUCAUUUUUGGCUUACGUAAUCCUCCGUAAUCCCUAUCAUCAAUUUAACUAU_________
.....(((((((.............(((((((...(((...(((((((........)))))))..)))..)))))))...............))))))).................. (-16.23 = -17.16 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:51 2006