Locus 3001

Sequence ID 2L_DroMel_CAF1
Location 8,565,555 – 8,565,655
Length 100
Max. P 0.833695
window4774

overview

Window 4

Location 8,565,555 – 8,565,655
Length 100
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 91.19
Mean single sequence MFE -23.26
Consensus MFE -17.14
Energy contribution -17.82
Covariance contribution 0.68
Combinations/Pair 1.04
Mean z-score -2.29
Structure conservation index 0.74
SVM decision value 0.72
SVM RNA-class probability 0.833695
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8565555 100 - 22407834
UUCUGCGCCAA---AACUCCAGCAUCGCCUCGACUUUUUCUCCAUCAUCUGCUGCCGGCAACUU-UUCUGCUUCAUCUUGCACAAACAAAAAGCGGUGCAGAAA
(((((((((..---.....(((((.......((.......)).......)))))...((....(-((.(((........))).)))......))))))))))). ( -22.24)
>DroSec_CAF1 1415 100 - 1
UUCUGCGCCAA---AACUCCAGCAUCGCCUCGACUUUUUCUCCAUCAUCUGCUGCCGGCAACUU-UUCUGCUUCAUCUUGCACAAACAAAAAGCGGUGCAGAAA
(((((((((..---.....(((((.......((.......)).......)))))...((....(-((.(((........))).)))......))))))))))). ( -22.24)
>DroEre_CAF1 1412 97 - 1
UUCUGCGCCAA---AACUCCAGCAUCGCCUCGACUUUUUCUCCA---UCUGCUGCCGGCAACUU-UUCUGCUUCAUCUUGCACAAACAAAAAGCGGUGCAGAAA
(((((((((..---.....(((((.......((.....))....---..)))))...((....(-((.(((........))).)))......))))))))))). ( -22.12)
>DroYak_CAF1 1397 98 - 1
UUCUGCGCCAA--AAACUCCAGCAUCGCCUCGACUUUUUCUCCA---UCUGCUGCCGGCAACUU-UUCUGCUUCAUCUUGCACAAACAAAAAGCGGUGCAGAAA
(((((((((((--(((.((.((......)).)).))))).....---...(((...(....).(-((.(((........))).))).....)))))))))))). ( -22.40)
>DroAna_CAF1 1263 96 - 1
UUCUUCGGGGAGCGAGCUCCUGC---UCCUCGACUUUUUCUCCA---UCUGCUGCCGGCAACUUUUUCUGCUUCAUCUUGCACAAACAAAAAGCGUUGCAGA--
....((((((((((......)))---)))))))...........---(((((.((((....)..(((.(((........))).)))......).)).)))))-- ( -27.30)
>consensus
UUCUGCGCCAA___AACUCCAGCAUCGCCUCGACUUUUUCUCCA___UCUGCUGCCGGCAACUU_UUCUGCUUCAUCUUGCACAAACAAAAAGCGGUGCAGAAA
(((((((((..........(((((.......((.......)).......)))))...((......((.(((........))).)).......))))))))))). (-17.14 = -17.82 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:50 2006